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Cluster: Rep_500_CGC86

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_266 Rep_500_c_266_21 35665 37074 - GH105
CAZyme Rep_500_c_266 Rep_500_c_266_22 37078 38955 - PL11_1
CAZyme Rep_500_c_266 Rep_500_c_266_23 39189 40331 + GH105
CAZyme Rep_500_c_266 Rep_500_c_266_24 40456 42090 + CE12 | CE12
pfam Rep_500_c_266 Rep_500_c_266_25 42503 44275 + PDDEXK_9 | AAA-ATPase_like
CAZyme Rep_500_c_266 Rep_500_c_266_26 44320 46428 - PL11_1
pfam Rep_500_c_266 Rep_500_c_266_27 46477 48207 - SusD_RagB | SusD-like_3
TC Rep_500_c_266 Rep_500_c_266_28 48229 51078 - 1.B.14.6.1
pfam Rep_500_c_266 Rep_500_c_266_29 51131 53146 - SusD_RagB | SusD-like_3
TC Rep_500_c_266 Rep_500_c_266_30 53171 56389 - 1.B.14.6.1
Gene ID: Rep_500_c_266_21
Type: CAZyme
Location: 35665 - 37074 (-)
Gene ID: Rep_500_c_266_22
Type: CAZyme
Location: 37078 - 38955 (-)
Gene ID: Rep_500_c_266_23
Type: CAZyme
Location: 39189 - 40331 (+)
Gene ID: Rep_500_c_266_24
Type: CAZyme
Location: 40456 - 42090 (+)
Gene ID: Rep_500_c_266_25
Type: pfam
Location: 42503 - 44275 (+)
Gene ID: Rep_500_c_266_26
Type: CAZyme
Location: 44320 - 46428 (-)
Gene ID: Rep_500_c_266_27
Type: pfam
Location: 46477 - 48207 (-)
Gene ID: Rep_500_c_266_28
Type: TC
Location: 48229 - 51078 (-)
Gene ID: Rep_500_c_266_29
Type: pfam
Location: 51131 - 53146 (-)
Gene ID: Rep_500_c_266_30
Type: TC
Location: 53171 - 56389 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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