Cluster: Rep_500_CGC80
🧬 Cluster Details
- Gene Count: 27
- CAZyme Count: 13
- Substrate:
- Genome ID: Rep_500
- CGC Family ID: CGCFAM_02229
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_500_c_250 | Rep_500_c_250_39 | 60167 | 62503 | + | GH35 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_40 | 62532 | 63500 | + | GH43_19 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_41 | 63666 | 66167 | + | GH51_2 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_42 | 66177 | 68132 | + | GH97 |
| TF | Rep_500_c_250 | Rep_500_c_250_43 | 68516 | 72673 | + | HTH_AraC |
| TC | Rep_500_c_250 | Rep_500_c_250_44 | 72862 | 75990 | + | 1.B.14.6.1 |
| pfam | Rep_500_c_250 | Rep_500_c_250_45 | 76009 | 77937 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_500_c_250 | Rep_500_c_250_46 | 77970 | 80984 | + | 1.B.14.6.1 |
| pfam | Rep_500_c_250 | Rep_500_c_250_47 | 81014 | 82651 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_48 | 82680 | 83573 | + | CBM32 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_49 | 83592 | 85067 | + | GH16_3 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_50 | 85099 | 87003 | + | GH16_3 | GH43_24 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_51 | 87127 | 88383 | + | GH154 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_52 | 88412 | 89434 | + | GH43_24 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_53 | 89449 | 90744 | + | PL42 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_54 | 90749 | 91882 | + | GH105 |
| pfam | Rep_500_c_250 | Rep_500_c_250_55 | 91891 | 92907 | - | Acetyltransf_1 | Acetyltransf_9 |
| pfam | Rep_500_c_250 | Rep_500_c_250_56 | 92925 | 93842 | - | LPG_synthase_C |
| TC | Rep_500_c_250 | Rep_500_c_250_57 | 93897 | 94592 | - | 2.A.122.1.1 |
| TC | Rep_500_c_250 | Rep_500_c_250_58 | 94589 | 95032 | - | 1.E.14.1.13 |
| pfam | Rep_500_c_250 | Rep_500_c_250_59 | 95231 | 96250 | + | PTA_PTB |
| pfam | Rep_500_c_250 | Rep_500_c_250_60 | 96297 | 97496 | + | Acetate_kinase |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_61 | 97634 | 98623 | + | GT2 |
| CAZyme | Rep_500_c_250 | Rep_500_c_250_62 | 98789 | 100786 | - | GH20 |
| pfam | Rep_500_c_250 | Rep_500_c_250_63 | 100933 | 101628 | + | RadC | UPF0758_N |
| TF | Rep_500_c_250 | Rep_500_c_250_64 | 101643 | 105575 | - | HTH_AraC |
| TC | Rep_500_c_250 | Rep_500_c_250_65 | 105919 | 106509 | + | 1.B.14.6.1 |
Gene ID: Rep_500_c_250_39
Type: CAZyme
Location: 60167 - 62503 (+)
Type: CAZyme
Location: 60167 - 62503 (+)
Gene ID: Rep_500_c_250_40
Type: CAZyme
Location: 62532 - 63500 (+)
Type: CAZyme
Location: 62532 - 63500 (+)
Gene ID: Rep_500_c_250_41
Type: CAZyme
Location: 63666 - 66167 (+)
Type: CAZyme
Location: 63666 - 66167 (+)
Gene ID: Rep_500_c_250_42
Type: CAZyme
Location: 66177 - 68132 (+)
Type: CAZyme
Location: 66177 - 68132 (+)
Gene ID: Rep_500_c_250_43
Type: TF
Location: 68516 - 72673 (+)
Type: TF
Location: 68516 - 72673 (+)
Gene ID: Rep_500_c_250_44
Type: TC
Location: 72862 - 75990 (+)
Type: TC
Location: 72862 - 75990 (+)
Gene ID: Rep_500_c_250_45
Type: pfam
Location: 76009 - 77937 (+)
Type: pfam
Location: 76009 - 77937 (+)
Gene ID: Rep_500_c_250_46
Type: TC
Location: 77970 - 80984 (+)
Type: TC
Location: 77970 - 80984 (+)
Gene ID: Rep_500_c_250_47
Type: pfam
Location: 81014 - 82651 (+)
Type: pfam
Location: 81014 - 82651 (+)
Gene ID: Rep_500_c_250_48
Type: CAZyme
Location: 82680 - 83573 (+)
Type: CAZyme
Location: 82680 - 83573 (+)
Gene ID: Rep_500_c_250_49
Type: CAZyme
Location: 83592 - 85067 (+)
Type: CAZyme
Location: 83592 - 85067 (+)
Gene ID: Rep_500_c_250_50
Type: CAZyme
Location: 85099 - 87003 (+)
Type: CAZyme
Location: 85099 - 87003 (+)
Gene ID: Rep_500_c_250_51
Type: CAZyme
Location: 87127 - 88383 (+)
Type: CAZyme
Location: 87127 - 88383 (+)
Gene ID: Rep_500_c_250_52
Type: CAZyme
Location: 88412 - 89434 (+)
Type: CAZyme
Location: 88412 - 89434 (+)
Gene ID: Rep_500_c_250_53
Type: CAZyme
Location: 89449 - 90744 (+)
Type: CAZyme
Location: 89449 - 90744 (+)
Gene ID: Rep_500_c_250_54
Type: CAZyme
Location: 90749 - 91882 (+)
Type: CAZyme
Location: 90749 - 91882 (+)
Gene ID: Rep_500_c_250_55
Type: pfam
Location: 91891 - 92907 (-)
Type: pfam
Location: 91891 - 92907 (-)
Gene ID: Rep_500_c_250_56
Type: pfam
Location: 92925 - 93842 (-)
Type: pfam
Location: 92925 - 93842 (-)
Gene ID: Rep_500_c_250_57
Type: TC
Location: 93897 - 94592 (-)
Type: TC
Location: 93897 - 94592 (-)
Gene ID: Rep_500_c_250_58
Type: TC
Location: 94589 - 95032 (-)
Type: TC
Location: 94589 - 95032 (-)
Gene ID: Rep_500_c_250_59
Type: pfam
Location: 95231 - 96250 (+)
Type: pfam
Location: 95231 - 96250 (+)
Gene ID: Rep_500_c_250_60
Type: pfam
Location: 96297 - 97496 (+)
Type: pfam
Location: 96297 - 97496 (+)
Gene ID: Rep_500_c_250_61
Type: CAZyme
Location: 97634 - 98623 (+)
Type: CAZyme
Location: 97634 - 98623 (+)
Gene ID: Rep_500_c_250_62
Type: CAZyme
Location: 98789 - 100786 (-)
Type: CAZyme
Location: 98789 - 100786 (-)
Gene ID: Rep_500_c_250_63
Type: pfam
Location: 100933 - 101628 (+)
Type: pfam
Location: 100933 - 101628 (+)
Gene ID: Rep_500_c_250_64
Type: TF
Location: 101643 - 105575 (-)
Type: TF
Location: 101643 - 105575 (-)
Gene ID: Rep_500_c_250_65
Type: TC
Location: 105919 - 106509 (+)
Type: TC
Location: 105919 - 106509 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides congonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_500_c_250_45 | vegan > omnivore | 1.32244 | 0.00358 |
| Rep_500_c_250_46 | vegan > omnivore | 1.43882 | 0.00358 |
| Rep_500_c_250_47 | vegan > omnivore | 1.25532 | 0.00358 |
| Rep_500_c_250_48 | vegan > omnivore | 1.11050 | 0.00358 |
| Rep_500_c_250_53 | vegan > omnivore | 1.09747 | 0.00189 |