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Cluster: Rep_500_CGC74

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_244 Rep_500_c_244_13 17698 20127 + GH20
STP Rep_500_c_244 Rep_500_c_244_14 20242 20772 - Sigma70_r2 | Sigma70_r4_2
pfam Rep_500_c_244 Rep_500_c_244_15 20931 22073 - BT_3987-like_N | Laminin_G_3
CAZyme Rep_500_c_244 Rep_500_c_244_16 22115 23260 - GH18
TC Rep_500_c_244 Rep_500_c_244_17 23282 24853 - 8.A.46.2.1
TC Rep_500_c_244 Rep_500_c_244_18 24870 27950 - 1.B.14.6.13
STP Rep_500_c_244 Rep_500_c_244_19 28600 29550 - Pyr_redox_2
pfam Rep_500_c_244 Rep_500_c_244_20 29589 30194 - LolA_2
TC Rep_500_c_244 Rep_500_c_244_21 30256 32751 - 3.A.12.1.1
Gene ID: Rep_500_c_244_13
Type: CAZyme
Location: 17698 - 20127 (+)
Gene ID: Rep_500_c_244_14
Type: STP
Location: 20242 - 20772 (-)
Gene ID: Rep_500_c_244_15
Type: pfam
Location: 20931 - 22073 (-)
Gene ID: Rep_500_c_244_16
Type: CAZyme
Location: 22115 - 23260 (-)
Gene ID: Rep_500_c_244_17
Type: TC
Location: 23282 - 24853 (-)
Gene ID: Rep_500_c_244_18
Type: TC
Location: 24870 - 27950 (-)
Gene ID: Rep_500_c_244_19
Type: STP
Location: 28600 - 29550 (-)
Gene ID: Rep_500_c_244_20
Type: pfam
Location: 29589 - 30194 (-)
Gene ID: Rep_500_c_244_21
Type: TC
Location: 30256 - 32751 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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