Cluster: Rep_500_CGC65
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_500
- CGC Family ID: CGCFAM_03108
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_500_c_231 | Rep_500_c_231_1 | 144 | 3392 | + | 1.B.14.6.1 |
| sulfatase | Rep_500_c_231 | Rep_500_c_231_2 | 3413 | 5161 | + | S1_27 |
| CAZyme | Rep_500_c_231 | Rep_500_c_231_3 | 5178 | 6860 | + | GH165 |
| CAZyme | Rep_500_c_231 | Rep_500_c_231_4 | 6874 | 8586 | + | GH165 |
| pfam | Rep_500_c_231 | Rep_500_c_231_5 | 8599 | 10161 | + | PKD | PQQ_2 | PKD_4 | K319L-like_PKD |
| CAZyme | Rep_500_c_231 | Rep_500_c_231_6 | 10184 | 11728 | + | GH165 |
| NULL(UNKNOWN) | Rep_500_c_231 | Rep_500_c_231_7 | 11854 | 12063 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_500_c_231 | Rep_500_c_231_8 | 12183 | 12716 | - | Acetyltransf_1 | Acetyltransf_3 |
| TC | Rep_500_c_231 | Rep_500_c_231_9 | 12812 | 15244 | - | 2.A.21.9.2 |
| CAZyme | Rep_500_c_231 | Rep_500_c_231_10 | 15466 | 18165 | + | GH138 |
| CAZyme | Rep_500_c_231 | Rep_500_c_231_11 | 18175 | 22374 | + | CBM57 | CBM97 | GH137 | GH2 |
| TF | Rep_500_c_231 | Rep_500_c_231_12 | 22591 | 23436 | + | HTH_AraC |
| STP | Rep_500_c_231 | Rep_500_c_231_13 | 23433 | 24935 | - | HATPase_c | HisKA |
| CAZyme | Rep_500_c_231 | Rep_500_c_231_14 | 25186 | 27000 | + | GH2 |
Gene ID: Rep_500_c_231_1
Type: TC
Location: 144 - 3392 (+)
Type: TC
Location: 144 - 3392 (+)
Gene ID: Rep_500_c_231_2
Type: sulfatase
Location: 3413 - 5161 (+)
Type: sulfatase
Location: 3413 - 5161 (+)
Gene ID: Rep_500_c_231_3
Type: CAZyme
Location: 5178 - 6860 (+)
Type: CAZyme
Location: 5178 - 6860 (+)
Gene ID: Rep_500_c_231_4
Type: CAZyme
Location: 6874 - 8586 (+)
Type: CAZyme
Location: 6874 - 8586 (+)
Gene ID: Rep_500_c_231_5
Type: pfam
Location: 8599 - 10161 (+)
Type: pfam
Location: 8599 - 10161 (+)
Gene ID: Rep_500_c_231_6
Type: CAZyme
Location: 10184 - 11728 (+)
Type: CAZyme
Location: 10184 - 11728 (+)
Gene ID: Rep_500_c_231_7
Type:
Location: 11854 - 12063 (-)
Type:
Location: 11854 - 12063 (-)
Gene ID: Rep_500_c_231_8
Type: pfam
Location: 12183 - 12716 (-)
Type: pfam
Location: 12183 - 12716 (-)
Gene ID: Rep_500_c_231_9
Type: TC
Location: 12812 - 15244 (-)
Type: TC
Location: 12812 - 15244 (-)
Gene ID: Rep_500_c_231_10
Type: CAZyme
Location: 15466 - 18165 (+)
Type: CAZyme
Location: 15466 - 18165 (+)
Gene ID: Rep_500_c_231_11
Type: CAZyme
Location: 18175 - 22374 (+)
Type: CAZyme
Location: 18175 - 22374 (+)
Gene ID: Rep_500_c_231_12
Type: TF
Location: 22591 - 23436 (+)
Type: TF
Location: 22591 - 23436 (+)
Gene ID: Rep_500_c_231_13
Type: STP
Location: 23433 - 24935 (-)
Type: STP
Location: 23433 - 24935 (-)
Gene ID: Rep_500_c_231_14
Type: CAZyme
Location: 25186 - 27000 (+)
Type: CAZyme
Location: 25186 - 27000 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides congonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_500_c_231_7 | vegan > omnivore | 1.26277 | 0.00358 |
| Rep_500_c_231_12 | vegan > omnivore | 1.33171 | 0.00358 |
| Rep_500_c_231_13 | vegan > omnivore | 1.49633 | 0.00358 |
| Rep_500_c_231_13 | vegetarian > omnivore | 1.04276 | 0.02280 |