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Cluster: Rep_500_CGC64

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_500_c_228 Rep_500_c_228_15 24392 25933 - 8.A.46.1.3
TC Rep_500_c_228 Rep_500_c_228_16 25945 29067 - 1.B.14.6.1
TF Rep_500_c_228 Rep_500_c_228_17 29404 33477 + HTH_AraC | HTH_AraC
CAZyme Rep_500_c_228 Rep_500_c_228_18 33976 36399 - GH95
CAZyme Rep_500_c_228 Rep_500_c_228_19 36437 38776 - GH89
CAZyme Rep_500_c_228 Rep_500_c_228_20 39051 40484 + GH29
CAZyme Rep_500_c_228 Rep_500_c_228_21 40505 42877 + GH95
CAZyme Rep_500_c_228 Rep_500_c_228_22 42893 44785 + GH29
CAZyme Rep_500_c_228 Rep_500_c_228_23 44852 46081 + GH88
CAZyme Rep_500_c_228 Rep_500_c_228_24 46094 48565 + GH2
CAZyme Rep_500_c_228 Rep_500_c_228_25 48576 49787 + PL38
Gene ID: Rep_500_c_228_15
Type: TC
Location: 24392 - 25933 (-)
Gene ID: Rep_500_c_228_16
Type: TC
Location: 25945 - 29067 (-)
Gene ID: Rep_500_c_228_17
Type: TF
Location: 29404 - 33477 (+)
Gene ID: Rep_500_c_228_18
Type: CAZyme
Location: 33976 - 36399 (-)
Gene ID: Rep_500_c_228_19
Type: CAZyme
Location: 36437 - 38776 (-)
Gene ID: Rep_500_c_228_20
Type: CAZyme
Location: 39051 - 40484 (+)
Gene ID: Rep_500_c_228_21
Type: CAZyme
Location: 40505 - 42877 (+)
Gene ID: Rep_500_c_228_22
Type: CAZyme
Location: 42893 - 44785 (+)
Gene ID: Rep_500_c_228_23
Type: CAZyme
Location: 44852 - 46081 (+)
Gene ID: Rep_500_c_228_24
Type: CAZyme
Location: 46094 - 48565 (+)
Gene ID: Rep_500_c_228_25
Type: CAZyme
Location: 48576 - 49787 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_228_23 vegan > omnivore 1.75514 0.00358
Rep_500_c_228_24 vegan > omnivore 2.33890 0.00358

🧭 Explore Read Mapping of CGC

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