dbCAN HGM

Cluster: Rep_500_CGC43

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_500_c_183	Rep_500_c_183_10	15662	16795	+	3.A.1.13.2
TC	Rep_500_c_183	Rep_500_c_183_11	16792	17808	+	3.A.1.13.2
TC	Rep_500_c_183	Rep_500_c_183_12	17805	18560	+	3.A.1.13.2
pfam	Rep_500_c_183	Rep_500_c_183_13	18617	19324	-	Diphthami_syn_2
CAZyme	Rep_500_c_183	Rep_500_c_183_14	19421	20476	-	PL8_3
pfam	Rep_500_c_183	Rep_500_c_183_15	20416	21642	-	Lyase_8_N
TC	Rep_500_c_183	Rep_500_c_183_16	21966	23321	+	2.A.66.1.37
STP	Rep_500_c_183	Rep_500_c_183_17	23410	23910	+	cNMP_binding
CAZyme	Rep_500_c_183	Rep_500_c_183_18	24097	26835	-	GH92
TC	Rep_500_c_183	Rep_500_c_183_19	26853	28034	-	2.A.1.7.16
NULL(UNKNOWN)	Rep_500_c_183	Rep_500_c_183_20	28040	29179	-	NULL(UNKNOWN) [View Structural Homologs]
pfam	Rep_500_c_183	Rep_500_c_183_21	29160	30653	-	SusD_RagB \| SusD-like_2 \| SusD-like_3
TC	Rep_500_c_183	Rep_500_c_183_22	30667	33768	-	1.B.14.6.1

Gene ID: Rep_500_c_183_10
Type: TC
Location: 15662 - 16795 (+)

Gene ID: Rep_500_c_183_11
Type: TC
Location: 16792 - 17808 (+)

Gene ID: Rep_500_c_183_12
Type: TC
Location: 17805 - 18560 (+)

Gene ID: Rep_500_c_183_13
Type: pfam
Location: 18617 - 19324 (-)

Gene ID: Rep_500_c_183_14
Type: CAZyme
Location: 19421 - 20476 (-)

Gene ID: Rep_500_c_183_15
Type: pfam
Location: 20416 - 21642 (-)

Gene ID: Rep_500_c_183_16
Type: TC
Location: 21966 - 23321 (+)

Gene ID: Rep_500_c_183_17
Type: STP
Location: 23410 - 23910 (+)

Gene ID: Rep_500_c_183_18
Type: CAZyme
Location: 24097 - 26835 (-)

Gene ID: Rep_500_c_183_19
Type: TC
Location: 26853 - 28034 (-)

Gene ID: Rep_500_c_183_20
Type:
Location: 28040 - 29179 (-)

Gene ID: Rep_500_c_183_21
Type: pfam
Location: 29160 - 30653 (-)

Gene ID: Rep_500_c_183_22
Type: TC
Location: 30667 - 33768 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_500_c_183_17	vegan > omnivore	1.01679	0.00358
Rep_500_c_183_17	vegetarian > omnivore	1.17454	0.03276
Rep_500_c_183_18	vegetarian > vegan	2.30520	0.04902

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_500_c_183_18	vegan > flexitarian	1.35506	0.02473
Rep_500_c_183_18	vegan > omnivore	1.02290	0.02882
Rep_500_c_183_19	vegan > flexitarian	1.64341	0.02093
Rep_500_c_183_19	vegan > omnivore	1.02232	0.02641
Rep_500_c_183_20	vegan > flexitarian	1.90010	0.02093
Rep_500_c_183_20	vegan > omnivore	1.14334	0.02641
Rep_500_c_183_21	vegan > flexitarian	1.44939	0.02473
Rep_500_c_183_22	vegan > flexitarian	1.30613	0.02473