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Cluster: Rep_500_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_17 Rep_500_c_17_11 9097 11319 + GH84
TF Rep_500_c_17 Rep_500_c_17_12 11422 12312 - HTH_AraC | HTH_AraC
CAZyme Rep_500_c_17 Rep_500_c_17_13 12484 15300 + GH2
TC Rep_500_c_17 Rep_500_c_17_14 15341 16723 + 2.A.1.1.55
pfam Rep_500_c_17 Rep_500_c_17_15 16882 20163 + TPR_8 | TPR_8 | TPR_16 | TPR_16 | DUF5107
sulfatase Rep_500_c_17 Rep_500_c_17_16 20336 21487 - S1_8
CAZyme Rep_500_c_17 Rep_500_c_17_17 21511 24351 - GH3
Gene ID: Rep_500_c_17_11
Type: CAZyme
Location: 9097 - 11319 (+)
Gene ID: Rep_500_c_17_12
Type: TF
Location: 11422 - 12312 (-)
Gene ID: Rep_500_c_17_13
Type: CAZyme
Location: 12484 - 15300 (+)
Gene ID: Rep_500_c_17_14
Type: TC
Location: 15341 - 16723 (+)
Gene ID: Rep_500_c_17_15
Type: pfam
Location: 16882 - 20163 (+)
Gene ID: Rep_500_c_17_16
Type: sulfatase
Location: 20336 - 21487 (-)
Gene ID: Rep_500_c_17_17
Type: CAZyme
Location: 21511 - 24351 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_17_14 vegan > omnivore 1.19312 0.00189
Rep_500_c_17_15 vegan > omnivore 1.73706 0.00358
Rep_500_c_17_15 vegetarian > omnivore 1.90305 0.03259

🧭 Explore Read Mapping of CGC

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