Cluster: Rep_500_CGC32
🧬 Cluster Details
- Gene Count: 21
- CAZyme Count: 8
- Substrate: pectin/galactan
- Genome ID: Rep_500
- CGC Family ID: CGCFAM_00031
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_500_c_141 | Rep_500_c_141_1 | 233 | 1411 | - | PL13 |
| pfam | Rep_500_c_141 | Rep_500_c_141_2 | 1535 | 2086 | - | DUF4738 |
| TF | Rep_500_c_141 | Rep_500_c_141_3 | 2201 | 5722 | + | HTH_AraC |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_4 | 5838 | 8447 | + | GH147 |
| TC | Rep_500_c_141 | Rep_500_c_141_5 | 8753 | 11728 | + | 1.B.14.6.1 |
| TC | Rep_500_c_141 | Rep_500_c_141_6 | 11752 | 13329 | + | 8.A.46.1.1 |
| pfam | Rep_500_c_141 | Rep_500_c_141_7 | 13332 | 15116 | + | SusE | DUF5111 | DUF5114 |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_8 | 15130 | 16224 | + | GH53 |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_9 | 16296 | 18737 | + | GH2 |
| pfam | Rep_500_c_141 | Rep_500_c_141_10 | 18881 | 19567 | - | TrkA_N | F420_oxidored |
| TC | Rep_500_c_141 | Rep_500_c_141_11 | 19572 | 21401 | - | 2.A.38.4.3 |
| STP | Rep_500_c_141 | Rep_500_c_141_12 | 21536 | 22906 | + | PALP |
| TF | Rep_500_c_141 | Rep_500_c_141_13 | 23041 | 27102 | + | HTH_AraC |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_14 | 27694 | 29823 | + | PL12_2 |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_15 | 30250 | 32406 | + | PL12_2 |
| pfam | Rep_500_c_141 | Rep_500_c_141_16 | 32437 | 34671 | + | SGBP_BT4661-like |
| TC | Rep_500_c_141 | Rep_500_c_141_17 | 34686 | 37841 | + | 1.B.14.6.1 |
| TC | Rep_500_c_141 | Rep_500_c_141_18 | 37860 | 39593 | + | 8.A.46.1.3 |
| NULL(UNKNOWN) | Rep_500_c_141 | Rep_500_c_141_19 | 39634 | 39801 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_20 | 39798 | 41084 | + | GH88 |
| CAZyme | Rep_500_c_141 | Rep_500_c_141_21 | 41113 | 43113 | + | PL12_2 |
Gene ID: Rep_500_c_141_1
Type: CAZyme
Location: 233 - 1411 (-)
Type: CAZyme
Location: 233 - 1411 (-)
Gene ID: Rep_500_c_141_2
Type: pfam
Location: 1535 - 2086 (-)
Type: pfam
Location: 1535 - 2086 (-)
Gene ID: Rep_500_c_141_3
Type: TF
Location: 2201 - 5722 (+)
Type: TF
Location: 2201 - 5722 (+)
Gene ID: Rep_500_c_141_4
Type: CAZyme
Location: 5838 - 8447 (+)
Type: CAZyme
Location: 5838 - 8447 (+)
Gene ID: Rep_500_c_141_5
Type: TC
Location: 8753 - 11728 (+)
Type: TC
Location: 8753 - 11728 (+)
Gene ID: Rep_500_c_141_6
Type: TC
Location: 11752 - 13329 (+)
Type: TC
Location: 11752 - 13329 (+)
Gene ID: Rep_500_c_141_7
Type: pfam
Location: 13332 - 15116 (+)
Type: pfam
Location: 13332 - 15116 (+)
Gene ID: Rep_500_c_141_8
Type: CAZyme
Location: 15130 - 16224 (+)
Type: CAZyme
Location: 15130 - 16224 (+)
Gene ID: Rep_500_c_141_9
Type: CAZyme
Location: 16296 - 18737 (+)
Type: CAZyme
Location: 16296 - 18737 (+)
Gene ID: Rep_500_c_141_10
Type: pfam
Location: 18881 - 19567 (-)
Type: pfam
Location: 18881 - 19567 (-)
Gene ID: Rep_500_c_141_11
Type: TC
Location: 19572 - 21401 (-)
Type: TC
Location: 19572 - 21401 (-)
Gene ID: Rep_500_c_141_12
Type: STP
Location: 21536 - 22906 (+)
Type: STP
Location: 21536 - 22906 (+)
Gene ID: Rep_500_c_141_13
Type: TF
Location: 23041 - 27102 (+)
Type: TF
Location: 23041 - 27102 (+)
Gene ID: Rep_500_c_141_14
Type: CAZyme
Location: 27694 - 29823 (+)
Type: CAZyme
Location: 27694 - 29823 (+)
Gene ID: Rep_500_c_141_15
Type: CAZyme
Location: 30250 - 32406 (+)
Type: CAZyme
Location: 30250 - 32406 (+)
Gene ID: Rep_500_c_141_16
Type: pfam
Location: 32437 - 34671 (+)
Type: pfam
Location: 32437 - 34671 (+)
Gene ID: Rep_500_c_141_17
Type: TC
Location: 34686 - 37841 (+)
Type: TC
Location: 34686 - 37841 (+)
Gene ID: Rep_500_c_141_18
Type: TC
Location: 37860 - 39593 (+)
Type: TC
Location: 37860 - 39593 (+)
Gene ID: Rep_500_c_141_19
Type:
Location: 39634 - 39801 (+)
Type:
Location: 39634 - 39801 (+)
Gene ID: Rep_500_c_141_20
Type: CAZyme
Location: 39798 - 41084 (+)
Type: CAZyme
Location: 39798 - 41084 (+)
Gene ID: Rep_500_c_141_21
Type: CAZyme
Location: 41113 - 43113 (+)
Type: CAZyme
Location: 41113 - 43113 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides congonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_500_c_141_5 | vegetarian > omnivore | 1.27421 | 0.01805 |
| Rep_500_c_141_7 | vegan > omnivore | 1.11061 | 0.00358 |