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Cluster: Rep_500_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_500_c_127 Rep_500_c_127_8 8830 9624 - 3.A.1.11.8
TC Rep_500_c_127 Rep_500_c_127_9 9618 10418 - 3.A.1.11.8
TC Rep_500_c_127 Rep_500_c_127_10 10430 11821 - 3.A.1.11.8
pfam Rep_500_c_127 Rep_500_c_127_11 11960 13060 + Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 | DUF4369
CAZyme Rep_500_c_127 Rep_500_c_127_12 13201 15765 - GT35
CAZyme Rep_500_c_127 Rep_500_c_127_13 15803 17464 - GT3
TC Rep_500_c_127 Rep_500_c_127_14 17670 18131 - 3.A.2.2.2
TC Rep_500_c_127 Rep_500_c_127_15 18187 20004 - 3.A.2.2.2
pfam Rep_500_c_127 Rep_500_c_127_16 20001 20606 - ATP-synt_D
TC Rep_500_c_127 Rep_500_c_127_17 20650 21975 - 3.A.2.3.3
TC Rep_500_c_127 Rep_500_c_127_18 22009 23766 - 3.A.2.3.3
Gene ID: Rep_500_c_127_8
Type: TC
Location: 8830 - 9624 (-)
Gene ID: Rep_500_c_127_9
Type: TC
Location: 9618 - 10418 (-)
Gene ID: Rep_500_c_127_10
Type: TC
Location: 10430 - 11821 (-)
Gene ID: Rep_500_c_127_11
Type: pfam
Location: 11960 - 13060 (+)
Gene ID: Rep_500_c_127_12
Type: CAZyme
Location: 13201 - 15765 (-)
Gene ID: Rep_500_c_127_13
Type: CAZyme
Location: 15803 - 17464 (-)
Gene ID: Rep_500_c_127_14
Type: TC
Location: 17670 - 18131 (-)
Gene ID: Rep_500_c_127_15
Type: TC
Location: 18187 - 20004 (-)
Gene ID: Rep_500_c_127_16
Type: pfam
Location: 20001 - 20606 (-)
Gene ID: Rep_500_c_127_17
Type: TC
Location: 20650 - 21975 (-)
Gene ID: Rep_500_c_127_18
Type: TC
Location: 22009 - 23766 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_127_10 vegan > omnivore 1.20050 0.00358

🧭 Explore Read Mapping of CGC

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