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Cluster: Rep_500_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_124 Rep_500_c_124_2 1133 4081 - GH105 | PL33_2
CAZyme Rep_500_c_124 Rep_500_c_124_3 4220 8098 - GH31_18
pfam Rep_500_c_124 Rep_500_c_124_4 8290 9720 - F5_F8_type_C
pfam Rep_500_c_124 Rep_500_c_124_5 9740 11512 - SusD_RagB | SusD-like_3
TC Rep_500_c_124 Rep_500_c_124_6 11526 14675 - 1.B.14.6.2
pfam Rep_500_c_124 Rep_500_c_124_7 14690 16498 - SusD_RagB | SusD-like_3
peptidase Rep_500_c_124 Rep_500_c_124_8 16510 19386 - I39.UPW
CAZyme Rep_500_c_124 Rep_500_c_124_9 19418 21526 - GH2
CAZyme Rep_500_c_124 Rep_500_c_124_10 21546 22976 - GH29
Gene ID: Rep_500_c_124_2
Type: CAZyme
Location: 1133 - 4081 (-)
Gene ID: Rep_500_c_124_3
Type: CAZyme
Location: 4220 - 8098 (-)
Gene ID: Rep_500_c_124_4
Type: pfam
Location: 8290 - 9720 (-)
Gene ID: Rep_500_c_124_5
Type: pfam
Location: 9740 - 11512 (-)
Gene ID: Rep_500_c_124_6
Type: TC
Location: 11526 - 14675 (-)
Gene ID: Rep_500_c_124_7
Type: pfam
Location: 14690 - 16498 (-)
Gene ID: Rep_500_c_124_8
Type: peptidase
Location: 16510 - 19386 (-)
Gene ID: Rep_500_c_124_9
Type: CAZyme
Location: 19418 - 21526 (-)
Gene ID: Rep_500_c_124_10
Type: CAZyme
Location: 21546 - 22976 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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