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Cluster: Rep_500_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_114 Rep_500_c_114_6 11049 13688 + GH2
pfam Rep_500_c_114 Rep_500_c_114_7 13849 14160 + FeS_assembly_P
NULL(UNKNOWN) Rep_500_c_114 Rep_500_c_114_8 14229 14993 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_500_c_114 Rep_500_c_114_9 15186 17537 - GH13
pfam Rep_500_c_114 Rep_500_c_114_10 17641 19008 - SusF_SusE | SusF_N
pfam Rep_500_c_114 Rep_500_c_114_11 19032 20180 - SusE | SusF_SusE
TC Rep_500_c_114 Rep_500_c_114_12 20220 21818 - 8.A.46.1.1
TC Rep_500_c_114 Rep_500_c_114_13 21839 24862 - 1.B.14.6.1
CAZyme Rep_500_c_114 Rep_500_c_114_14 24951 27161 - GH97
CAZyme Rep_500_c_114 Rep_500_c_114_15 27360 29213 - GH13_46
Gene ID: Rep_500_c_114_6
Type: CAZyme
Location: 11049 - 13688 (+)
Gene ID: Rep_500_c_114_7
Type: pfam
Location: 13849 - 14160 (+)
Gene ID: Rep_500_c_114_8
Type:
Location: 14229 - 14993 (+)
Gene ID: Rep_500_c_114_9
Type: CAZyme
Location: 15186 - 17537 (-)
Gene ID: Rep_500_c_114_10
Type: pfam
Location: 17641 - 19008 (-)
Gene ID: Rep_500_c_114_11
Type: pfam
Location: 19032 - 20180 (-)
Gene ID: Rep_500_c_114_12
Type: TC
Location: 20220 - 21818 (-)
Gene ID: Rep_500_c_114_13
Type: TC
Location: 21839 - 24862 (-)
Gene ID: Rep_500_c_114_14
Type: CAZyme
Location: 24951 - 27161 (-)
Gene ID: Rep_500_c_114_15
Type: CAZyme
Location: 27360 - 29213 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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