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Cluster: Rep_500_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_500_c_108 Rep_500_c_108_12 15444 18623 + 1.B.14.6.2
pfam Rep_500_c_108 Rep_500_c_108_13 18637 20259 + SusD-like | SusD-like_2
NULL(UNKNOWN) Rep_500_c_108 Rep_500_c_108_14 20294 20683 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_500_c_108 Rep_500_c_108_15 20705 22342 + GH5_38
CAZyme Rep_500_c_108 Rep_500_c_108_16 22383 24674 + GH3
CAZyme Rep_500_c_108 Rep_500_c_108_17 24683 27088 + GH3
STP Rep_500_c_108 Rep_500_c_108_18 27233 28180 - PALP
CAZyme Rep_500_c_108 Rep_500_c_108_19 28323 29564 - GH88
pfam Rep_500_c_108 Rep_500_c_108_20 29587 30759 - Alginate_lyase
CAZyme Rep_500_c_108 Rep_500_c_108_21 30781 32658 - PL35
Gene ID: Rep_500_c_108_12
Type: TC
Location: 15444 - 18623 (+)
Gene ID: Rep_500_c_108_13
Type: pfam
Location: 18637 - 20259 (+)
Gene ID: Rep_500_c_108_14
Type:
Location: 20294 - 20683 (+)
Gene ID: Rep_500_c_108_15
Type: CAZyme
Location: 20705 - 22342 (+)
Gene ID: Rep_500_c_108_16
Type: CAZyme
Location: 22383 - 24674 (+)
Gene ID: Rep_500_c_108_17
Type: CAZyme
Location: 24683 - 27088 (+)
Gene ID: Rep_500_c_108_18
Type: STP
Location: 27233 - 28180 (-)
Gene ID: Rep_500_c_108_19
Type: CAZyme
Location: 28323 - 29564 (-)
Gene ID: Rep_500_c_108_20
Type: pfam
Location: 29587 - 30759 (-)
Gene ID: Rep_500_c_108_21
Type: CAZyme
Location: 30781 - 32658 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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