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Cluster: Rep_500_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_6 Rep_500_c_6_3 1036 2235 + GH88
TF Rep_500_c_6 Rep_500_c_6_4 2433 6587 + HTH_AraC
CAZyme Rep_500_c_6 Rep_500_c_6_5 7053 9656 + PL15_2
TC Rep_500_c_6 Rep_500_c_6_6 9681 10421 + 9.B.171.1.2
pfam Rep_500_c_6 Rep_500_c_6_7 10461 11471 + DUF6562
NULL(UNKNOWN) Rep_500_c_6 Rep_500_c_6_8 11520 13076 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_500_c_6 Rep_500_c_6_9 13208 15760 + PL15
TC Rep_500_c_6 Rep_500_c_6_10 15807 19019 + 1.B.14.6.1
TC Rep_500_c_6 Rep_500_c_6_11 19040 20734 + 8.A.46.1.3
Gene ID: Rep_500_c_6_3
Type: CAZyme
Location: 1036 - 2235 (+)
Gene ID: Rep_500_c_6_4
Type: TF
Location: 2433 - 6587 (+)
Gene ID: Rep_500_c_6_5
Type: CAZyme
Location: 7053 - 9656 (+)
Gene ID: Rep_500_c_6_6
Type: TC
Location: 9681 - 10421 (+)
Gene ID: Rep_500_c_6_7
Type: pfam
Location: 10461 - 11471 (+)
Gene ID: Rep_500_c_6_8
Type:
Location: 11520 - 13076 (+)
Gene ID: Rep_500_c_6_9
Type: CAZyme
Location: 13208 - 15760 (+)
Gene ID: Rep_500_c_6_10
Type: TC
Location: 15807 - 19019 (+)
Gene ID: Rep_500_c_6_11
Type: TC
Location: 19040 - 20734 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_6_8 vegan > omnivore 1.13053 0.00358

🧭 Explore Read Mapping of CGC

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