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Cluster: Rep_500_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_500_c_69 Rep_500_c_69_10 11504 14866 + 1.B.14.6.13
TC Rep_500_c_69 Rep_500_c_69_11 14879 16480 + 8.A.46.2.2
CAZyme Rep_500_c_69 Rep_500_c_69_12 16523 17536 + GH18
pfam Rep_500_c_69 Rep_500_c_69_13 17561 18556 + F5_F8_type_C | BT_3987-like_N | F5_F8_type_C_2
pfam Rep_500_c_69 Rep_500_c_69_14 18568 19782 + BT_3987-like_N | Laminin_G_3
CAZyme Rep_500_c_69 Rep_500_c_69_15 19935 22286 + GH3
NULL(UNKNOWN) Rep_500_c_69 Rep_500_c_69_16 22777 24120 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_500_c_69 Rep_500_c_69_17 24145 27582 + 1.B.14.6.1
Gene ID: Rep_500_c_69_10
Type: TC
Location: 11504 - 14866 (+)
Gene ID: Rep_500_c_69_11
Type: TC
Location: 14879 - 16480 (+)
Gene ID: Rep_500_c_69_12
Type: CAZyme
Location: 16523 - 17536 (+)
Gene ID: Rep_500_c_69_13
Type: pfam
Location: 17561 - 18556 (+)
Gene ID: Rep_500_c_69_14
Type: pfam
Location: 18568 - 19782 (+)
Gene ID: Rep_500_c_69_15
Type: CAZyme
Location: 19935 - 22286 (+)
Gene ID: Rep_500_c_69_16
Type:
Location: 22777 - 24120 (+)
Gene ID: Rep_500_c_69_17
Type: TC
Location: 24145 - 27582 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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