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Cluster: Rep_500_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_50 Rep_500_c_50_33 51169 52848 + PL29
TF Rep_500_c_50 Rep_500_c_50_34 52857 56888 - HTH_AraC
pfam Rep_500_c_50 Rep_500_c_50_35 57567 57932 - DUF5043
CAZyme Rep_500_c_50 Rep_500_c_50_36 58038 62087 - GH20 | GH29
CAZyme Rep_500_c_50 Rep_500_c_50_37 62100 64712 - GH3
CAZyme Rep_500_c_50 Rep_500_c_50_38 64736 66616 - GH29
CAZyme Rep_500_c_50 Rep_500_c_50_39 66631 68913 - GH95
pfam Rep_500_c_50 Rep_500_c_50_40 69175 70014 - PHP
TC Rep_500_c_50 Rep_500_c_50_41 70048 71916 - 3.A.1.120.6
Gene ID: Rep_500_c_50_33
Type: CAZyme
Location: 51169 - 52848 (+)
Gene ID: Rep_500_c_50_34
Type: TF
Location: 52857 - 56888 (-)
Gene ID: Rep_500_c_50_35
Type: pfam
Location: 57567 - 57932 (-)
Gene ID: Rep_500_c_50_36
Type: CAZyme
Location: 58038 - 62087 (-)
Gene ID: Rep_500_c_50_37
Type: CAZyme
Location: 62100 - 64712 (-)
Gene ID: Rep_500_c_50_38
Type: CAZyme
Location: 64736 - 66616 (-)
Gene ID: Rep_500_c_50_39
Type: CAZyme
Location: 66631 - 68913 (-)
Gene ID: Rep_500_c_50_40
Type: pfam
Location: 69175 - 70014 (-)
Gene ID: Rep_500_c_50_41
Type: TC
Location: 70048 - 71916 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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