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Cluster: Rep_500_CGC109

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_352 Rep_500_c_352_3 1920 3767 - GH110
NULL(UNKNOWN) Rep_500_c_352 Rep_500_c_352_4 3930 4169 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_500_c_352 Rep_500_c_352_5 4346 5044 + FecR
TC Rep_500_c_352 Rep_500_c_352_6 5090 8488 + 1.B.14.6.1
pfam Rep_500_c_352 Rep_500_c_352_7 8500 10404 + SusD_RagB | SusD-like_3
CAZyme Rep_500_c_352 Rep_500_c_352_8 10417 11295 + CBM32
CAZyme Rep_500_c_352 Rep_500_c_352_9 11455 14325 + CBM32
STP Rep_500_c_352 Rep_500_c_352_10 14410 15036 + Sigma70_r4_2
CAZyme Rep_500_c_352 Rep_500_c_352_11 15008 16267 - GH109
Gene ID: Rep_500_c_352_3
Type: CAZyme
Location: 1920 - 3767 (-)
Gene ID: Rep_500_c_352_4
Type:
Location: 3930 - 4169 (-)
Gene ID: Rep_500_c_352_5
Type: STP
Location: 4346 - 5044 (+)
Gene ID: Rep_500_c_352_6
Type: TC
Location: 5090 - 8488 (+)
Gene ID: Rep_500_c_352_7
Type: pfam
Location: 8500 - 10404 (+)
Gene ID: Rep_500_c_352_8
Type: CAZyme
Location: 10417 - 11295 (+)
Gene ID: Rep_500_c_352_9
Type: CAZyme
Location: 11455 - 14325 (+)
Gene ID: Rep_500_c_352_10
Type: STP
Location: 14410 - 15036 (+)
Gene ID: Rep_500_c_352_11
Type: CAZyme
Location: 15008 - 16267 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_500_c_352_4 vegan > omnivore 1.78962 0.00358
Rep_500_c_352_11 vegan > omnivore 1.04544 0.00358

🧭 Explore Read Mapping of CGC

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