Cluster: Rep_500_CGC107
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_500
- CGC Family ID: CGCFAM_02285
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_500_c_347 | Rep_500_c_347_5 | 5201 | 7396 | + | GH92 |
| STP | Rep_500_c_347 | Rep_500_c_347_6 | 7556 | 8599 | - | FecR |
| TF | Rep_500_c_347 | Rep_500_c_347_7 | 8654 | 9403 | - | GerE |
| TC | Rep_500_c_347 | Rep_500_c_347_8 | 9569 | 13132 | + | 1.B.14.6.1 |
| STP | Rep_500_c_347 | Rep_500_c_347_9 | 13144 | 14922 | + | TPR_1 |
| CAZyme | Rep_500_c_347 | Rep_500_c_347_10 | 14936 | 16222 | + | GH43_17 |
| pfam | Rep_500_c_347 | Rep_500_c_347_11 | 16235 | 17755 | + | TIG | BACON |
| CAZyme | Rep_500_c_347 | Rep_500_c_347_12 | 17793 | 18869 | + | GH5_13 |
| CAZyme | Rep_500_c_347 | Rep_500_c_347_13 | 19063 | 20487 | - | CE20 |
| CAZyme | Rep_500_c_347 | Rep_500_c_347_14 | 20499 | 22556 | - | GH65 |
Gene ID: Rep_500_c_347_5
Type: CAZyme
Location: 5201 - 7396 (+)
Type: CAZyme
Location: 5201 - 7396 (+)
Gene ID: Rep_500_c_347_6
Type: STP
Location: 7556 - 8599 (-)
Type: STP
Location: 7556 - 8599 (-)
Gene ID: Rep_500_c_347_7
Type: TF
Location: 8654 - 9403 (-)
Type: TF
Location: 8654 - 9403 (-)
Gene ID: Rep_500_c_347_8
Type: TC
Location: 9569 - 13132 (+)
Type: TC
Location: 9569 - 13132 (+)
Gene ID: Rep_500_c_347_9
Type: STP
Location: 13144 - 14922 (+)
Type: STP
Location: 13144 - 14922 (+)
Gene ID: Rep_500_c_347_10
Type: CAZyme
Location: 14936 - 16222 (+)
Type: CAZyme
Location: 14936 - 16222 (+)
Gene ID: Rep_500_c_347_11
Type: pfam
Location: 16235 - 17755 (+)
Type: pfam
Location: 16235 - 17755 (+)
Gene ID: Rep_500_c_347_12
Type: CAZyme
Location: 17793 - 18869 (+)
Type: CAZyme
Location: 17793 - 18869 (+)
Gene ID: Rep_500_c_347_13
Type: CAZyme
Location: 19063 - 20487 (-)
Type: CAZyme
Location: 19063 - 20487 (-)
Gene ID: Rep_500_c_347_14
Type: CAZyme
Location: 20499 - 22556 (-)
Type: CAZyme
Location: 20499 - 22556 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides congonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_500_c_347_6 | vegan > omnivore | 1.25178 | 0.00358 |
| Rep_500_c_347_6 | vegetarian > omnivore | 1.29812 | 0.02280 |
| Rep_500_c_347_7 | vegan > omnivore | 1.54560 | 0.00358 |
| Rep_500_c_347_7 | vegetarian > omnivore | 1.58703 | 0.03259 |
| Rep_500_c_347_8 | vegan > omnivore | 2.36231 | 0.00358 |
| Rep_500_c_347_8 | vegetarian > omnivore | 2.15159 | 0.02280 |
| Rep_500_c_347_10 | vegan > omnivore | 3.97202 | 0.00358 |
| Rep_500_c_347_10 | vegetarian > omnivore | 3.69537 | 0.03276 |
| Rep_500_c_347_11 | vegan > omnivore | 4.61806 | 0.00358 |
| Rep_500_c_347_11 | vegetarian > omnivore | 3.64986 | 0.02280 |
| Rep_500_c_347_13 | vegan > omnivore | 3.35104 | 0.00358 |
| Rep_500_c_347_14 | vegan > omnivore | 1.32065 | 0.00358 |
| Rep_500_c_347_14 | vegetarian > omnivore | 1.44765 | 0.02280 |