Cluster: Rep_500_CGC101
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate: host glycan
- Genome ID: Rep_500
- CGC Family ID: CGCFAM_00479
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_500_c_326 | Rep_500_c_326_9 | 9780 | 13061 | - | 1.B.14.6.1 |
| pfam | Rep_500_c_326 | Rep_500_c_326_10 | 13128 | 14543 | - | DUF4957 | DUF4992 | DUF5123 |
| pfam | Rep_500_c_326 | Rep_500_c_326_11 | 15577 | 17793 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_500_c_326 | Rep_500_c_326_12 | 17808 | 21116 | - | 1.B.14.6.2 |
| pfam | Rep_500_c_326 | Rep_500_c_326_13 | 21147 | 22619 | - | DUF4957 | DUF4992 | DUF5123 |
| pfam | Rep_500_c_326 | Rep_500_c_326_14 | 22947 | 23837 | - | AP_endonuc_2 |
| CAZyme | Rep_500_c_326 | Rep_500_c_326_15 | 24138 | 26402 | - | GH92 |
| CAZyme | Rep_500_c_326 | Rep_500_c_326_16 | 26410 | 27378 | - | GH130_2 |
| pfam | Rep_500_c_326 | Rep_500_c_326_17 | 27400 | 28725 | - | MFS_1 | MFS_1 |
| CAZyme | Rep_500_c_326 | Rep_500_c_326_18 | 28824 | 31028 | - | GH163 |
| pfam | Rep_500_c_326 | Rep_500_c_326_19 | 31289 | 32236 | - | F5_F8_type_C | DUF4999 | F5_F8_type_C_2 |
| pfam | Rep_500_c_326 | Rep_500_c_326_20 | 32260 | 33459 | - | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_500_c_326 | Rep_500_c_326_21 | 33468 | 34607 | - | GH18 |
| TC | Rep_500_c_326 | Rep_500_c_326_22 | 34635 | 36185 | - | 8.A.46.2.1 |
| TC | Rep_500_c_326 | Rep_500_c_326_23 | 36203 | 38944 | - | 1.B.14.6.13 |
Gene ID: Rep_500_c_326_9
Type: TC
Location: 9780 - 13061 (-)
Type: TC
Location: 9780 - 13061 (-)
Gene ID: Rep_500_c_326_10
Type: pfam
Location: 13128 - 14543 (-)
Type: pfam
Location: 13128 - 14543 (-)
Gene ID: Rep_500_c_326_11
Type: pfam
Location: 15577 - 17793 (-)
Type: pfam
Location: 15577 - 17793 (-)
Gene ID: Rep_500_c_326_12
Type: TC
Location: 17808 - 21116 (-)
Type: TC
Location: 17808 - 21116 (-)
Gene ID: Rep_500_c_326_13
Type: pfam
Location: 21147 - 22619 (-)
Type: pfam
Location: 21147 - 22619 (-)
Gene ID: Rep_500_c_326_14
Type: pfam
Location: 22947 - 23837 (-)
Type: pfam
Location: 22947 - 23837 (-)
Gene ID: Rep_500_c_326_15
Type: CAZyme
Location: 24138 - 26402 (-)
Type: CAZyme
Location: 24138 - 26402 (-)
Gene ID: Rep_500_c_326_16
Type: CAZyme
Location: 26410 - 27378 (-)
Type: CAZyme
Location: 26410 - 27378 (-)
Gene ID: Rep_500_c_326_17
Type: pfam
Location: 27400 - 28725 (-)
Type: pfam
Location: 27400 - 28725 (-)
Gene ID: Rep_500_c_326_18
Type: CAZyme
Location: 28824 - 31028 (-)
Type: CAZyme
Location: 28824 - 31028 (-)
Gene ID: Rep_500_c_326_19
Type: pfam
Location: 31289 - 32236 (-)
Type: pfam
Location: 31289 - 32236 (-)
Gene ID: Rep_500_c_326_20
Type: pfam
Location: 32260 - 33459 (-)
Type: pfam
Location: 32260 - 33459 (-)
Gene ID: Rep_500_c_326_21
Type: CAZyme
Location: 33468 - 34607 (-)
Type: CAZyme
Location: 33468 - 34607 (-)
Gene ID: Rep_500_c_326_22
Type: TC
Location: 34635 - 36185 (-)
Type: TC
Location: 34635 - 36185 (-)
Gene ID: Rep_500_c_326_23
Type: TC
Location: 36203 - 38944 (-)
Type: TC
Location: 36203 - 38944 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides congonensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_500_c_326_14 | vegan > omnivore | 1.06702 | 0.00358 |
| Rep_500_c_326_20 | vegan > omnivore | 1.10171 | 0.00358 |
| Rep_500_c_326_21 | vegan > omnivore | 1.52517 | 0.00358 |