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Cluster: Rep_500_CGC100

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_325 Rep_500_c_325_41 40172 41479 + CE7
NULL(UNKNOWN) Rep_500_c_325 Rep_500_c_325_42 41636 42043 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_500_c_325 Rep_500_c_325_43 42285 43958 - PRK
TC Rep_500_c_325 Rep_500_c_325_44 44041 45738 + 2.A.58.2.2
NULL(UNKNOWN) Rep_500_c_325 Rep_500_c_325_45 45830 46573 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_500_c_325 Rep_500_c_325_46 46667 46831 - Rubredoxin
TC Rep_500_c_325 Rep_500_c_325_47 46969 48231 + 2.A.21.9.2
TC Rep_500_c_325 Rep_500_c_325_48 48322 51027 + 3.A.3.2.10
Gene ID: Rep_500_c_325_41
Type: CAZyme
Location: 40172 - 41479 (+)
Gene ID: Rep_500_c_325_42
Type:
Location: 41636 - 42043 (-)
Gene ID: Rep_500_c_325_43
Type: pfam
Location: 42285 - 43958 (-)
Gene ID: Rep_500_c_325_44
Type: TC
Location: 44041 - 45738 (+)
Gene ID: Rep_500_c_325_45
Type:
Location: 45830 - 46573 (-)
Gene ID: Rep_500_c_325_46
Type: pfam
Location: 46667 - 46831 (-)
Gene ID: Rep_500_c_325_47
Type: TC
Location: 46969 - 48231 (+)
Gene ID: Rep_500_c_325_48
Type: TC
Location: 48322 - 51027 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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