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Cluster: Rep_500_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_500_c_2 Rep_500_c_2_14 14257 16545 - GH3
CAZyme Rep_500_c_2 Rep_500_c_2_15 16560 18926 - GH3
CAZyme Rep_500_c_2 Rep_500_c_2_16 18954 21413 - GH2
CAZyme Rep_500_c_2 Rep_500_c_2_17 21406 22458 - GH53
pfam Rep_500_c_2 Rep_500_c_2_18 22479 24101 - SusE | DUF5111 | DUF5111
TC Rep_500_c_2 Rep_500_c_2_19 24116 25678 - 8.A.46.1.1
TC Rep_500_c_2 Rep_500_c_2_20 25711 28665 - 1.B.14.6.1
TF Rep_500_c_2 Rep_500_c_2_21 28853 32761 - HTH_AraC
TC Rep_500_c_2 Rep_500_c_2_22 32897 33739 - 1.A.30.1.3
sulfatase Rep_500_c_2 Rep_500_c_2_23 33775 34359 - S1_7
TC Rep_500_c_2 Rep_500_c_2_24 34406 35323 - 2.A.115.1.5
Gene ID: Rep_500_c_2_14
Type: CAZyme
Location: 14257 - 16545 (-)
Gene ID: Rep_500_c_2_15
Type: CAZyme
Location: 16560 - 18926 (-)
Gene ID: Rep_500_c_2_16
Type: CAZyme
Location: 18954 - 21413 (-)
Gene ID: Rep_500_c_2_17
Type: CAZyme
Location: 21406 - 22458 (-)
Gene ID: Rep_500_c_2_18
Type: pfam
Location: 22479 - 24101 (-)
Gene ID: Rep_500_c_2_19
Type: TC
Location: 24116 - 25678 (-)
Gene ID: Rep_500_c_2_20
Type: TC
Location: 25711 - 28665 (-)
Gene ID: Rep_500_c_2_21
Type: TF
Location: 28853 - 32761 (-)
Gene ID: Rep_500_c_2_22
Type: TC
Location: 32897 - 33739 (-)
Gene ID: Rep_500_c_2_23
Type: sulfatase
Location: 33775 - 34359 (-)
Gene ID: Rep_500_c_2_24
Type: TC
Location: 34406 - 35323 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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