Cluster: Rep_490_CGC60
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_09037
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_2 | Rep_490_c_2_2846 | 3775185 | 3778451 | + | 1.B.14.6.1 |
| TC | Rep_490_c_2 | Rep_490_c_2_2847 | 3778491 | 3780050 | + | 8.A.46.1.4 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2848 | 3780086 | 3781804 | + | Fasciclin | DUF5108 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2849 | 3781810 | 3783552 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_490_c_2 | Rep_490_c_2_2850 | 3783569 | 3786721 | + | 1.B.14.6.2 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2851 | 3786727 | 3788478 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2852 | 3788511 | 3790118 | + | PL9 |
| NULL(UNKNOWN) | Rep_490_c_2 | Rep_490_c_2_2853 | 3790140 | 3790793 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2854 | 3791046 | 3794342 | + | PL26 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2855 | 3794421 | 3795965 | - | CE12 | CE12 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2856 | 3796076 | 3797215 | - | GH105 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2857 | 3797482 | 3799323 | + | PL11_1 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2858 | 3799327 | 3800724 | + | GH105 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2859 | 3800755 | 3801069 | + | rhaM |
| TF | Rep_490_c_2 | Rep_490_c_2_2860 | 3801212 | 3805513 | + | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2861 | 3805829 | 3806632 | + | CE6 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2862 | 3807285 | 3810254 | - | GH2 |
| TF | Rep_490_c_2 | Rep_490_c_2_2863 | 3810342 | 3814637 | - | HTH_AraC |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2864 | 3814982 | 3816295 | + | PL9_1 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2865 | 3816408 | 3817058 | - | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2866 | 3817132 | 3818808 | - | CBM91 | GH43_10 |
| pfam | Rep_490_c_2 | Rep_490_c_2_2867 | 3818973 | 3820205 | - | DUF4861 |
| CAZyme | Rep_490_c_2 | Rep_490_c_2_2868 | 3820357 | 3821943 | - | GH28 |
Gene ID: Rep_490_c_2_2846
Type: TC
Location: 3775185 - 3778451 (+)
Type: TC
Location: 3775185 - 3778451 (+)
Gene ID: Rep_490_c_2_2847
Type: TC
Location: 3778491 - 3780050 (+)
Type: TC
Location: 3778491 - 3780050 (+)
Gene ID: Rep_490_c_2_2848
Type: pfam
Location: 3780086 - 3781804 (+)
Type: pfam
Location: 3780086 - 3781804 (+)
Gene ID: Rep_490_c_2_2849
Type:
Location: 3781810 - 3783552 (+)
Type:
Location: 3781810 - 3783552 (+)
Gene ID: Rep_490_c_2_2850
Type: TC
Location: 3783569 - 3786721 (+)
Type: TC
Location: 3783569 - 3786721 (+)
Gene ID: Rep_490_c_2_2851
Type:
Location: 3786727 - 3788478 (+)
Type:
Location: 3786727 - 3788478 (+)
Gene ID: Rep_490_c_2_2852
Type: CAZyme
Location: 3788511 - 3790118 (+)
Type: CAZyme
Location: 3788511 - 3790118 (+)
Gene ID: Rep_490_c_2_2853
Type:
Location: 3790140 - 3790793 (+)
Type:
Location: 3790140 - 3790793 (+)
Gene ID: Rep_490_c_2_2854
Type: CAZyme
Location: 3791046 - 3794342 (+)
Type: CAZyme
Location: 3791046 - 3794342 (+)
Gene ID: Rep_490_c_2_2855
Type: CAZyme
Location: 3794421 - 3795965 (-)
Type: CAZyme
Location: 3794421 - 3795965 (-)
Gene ID: Rep_490_c_2_2856
Type: CAZyme
Location: 3796076 - 3797215 (-)
Type: CAZyme
Location: 3796076 - 3797215 (-)
Gene ID: Rep_490_c_2_2857
Type: CAZyme
Location: 3797482 - 3799323 (+)
Type: CAZyme
Location: 3797482 - 3799323 (+)
Gene ID: Rep_490_c_2_2858
Type: CAZyme
Location: 3799327 - 3800724 (+)
Type: CAZyme
Location: 3799327 - 3800724 (+)
Gene ID: Rep_490_c_2_2859
Type: pfam
Location: 3800755 - 3801069 (+)
Type: pfam
Location: 3800755 - 3801069 (+)
Gene ID: Rep_490_c_2_2860
Type: TF
Location: 3801212 - 3805513 (+)
Type: TF
Location: 3801212 - 3805513 (+)
Gene ID: Rep_490_c_2_2861
Type: CAZyme
Location: 3805829 - 3806632 (+)
Type: CAZyme
Location: 3805829 - 3806632 (+)
Gene ID: Rep_490_c_2_2862
Type: CAZyme
Location: 3807285 - 3810254 (-)
Type: CAZyme
Location: 3807285 - 3810254 (-)
Gene ID: Rep_490_c_2_2863
Type: TF
Location: 3810342 - 3814637 (-)
Type: TF
Location: 3810342 - 3814637 (-)
Gene ID: Rep_490_c_2_2864
Type: CAZyme
Location: 3814982 - 3816295 (+)
Type: CAZyme
Location: 3814982 - 3816295 (+)
Gene ID: Rep_490_c_2_2865
Type: pfam
Location: 3816408 - 3817058 (-)
Type: pfam
Location: 3816408 - 3817058 (-)
Gene ID: Rep_490_c_2_2866
Type: CAZyme
Location: 3817132 - 3818808 (-)
Type: CAZyme
Location: 3817132 - 3818808 (-)
Gene ID: Rep_490_c_2_2867
Type: pfam
Location: 3818973 - 3820205 (-)
Type: pfam
Location: 3818973 - 3820205 (-)
Gene ID: Rep_490_c_2_2868
Type: CAZyme
Location: 3820357 - 3821943 (-)
Type: CAZyme
Location: 3820357 - 3821943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.