Cluster: Rep_490_CGC107
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_490
- CGC Family ID: CGCFAM_00018
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_490_c_5 | Rep_490_c_5_95 | 117762 | 118577 | + | 9.B.18.2.1 |
| pfam | Rep_490_c_5 | Rep_490_c_5_96 | 118585 | 119790 | + | Epimerase | Polysacc_synt_C |
| pfam | Rep_490_c_5 | Rep_490_c_5_97 | 119793 | 120983 | + | Epimerase_2 | Glyphos_transf |
| CAZyme | Rep_490_c_5 | Rep_490_c_5_98 | 121290 | 122612 | + | GT4 |
| CAZyme | Rep_490_c_5 | Rep_490_c_5_99 | 122922 | 123887 | + | GT2 |
| NULL(UNKNOWN) | Rep_490_c_5 | Rep_490_c_5_100 | 123891 | 125393 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_490_c_5 | Rep_490_c_5_101 | 125397 | 126701 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_490_c_5 | Rep_490_c_5_102 | 126698 | 127795 | + | GT4 |
| CAZyme | Rep_490_c_5 | Rep_490_c_5_103 | 127792 | 128943 | + | GT4 |
| CAZyme | Rep_490_c_5 | Rep_490_c_5_104 | 129089 | 130315 | + | GT4 |
| NULL(UNKNOWN) | Rep_490_c_5 | Rep_490_c_5_105 | 130281 | 131393 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_490_c_5 | Rep_490_c_5_106 | 131402 | 132559 | + | ATP-grasp_3 | CPSase_L_D2 | RimK | ATPgrasp_Ter |
| TC | Rep_490_c_5 | Rep_490_c_5_107 | 132559 | 133251 | + | 9.B.18.1.2 |
Gene ID: Rep_490_c_5_95
Type: TC
Location: 117762 - 118577 (+)
Type: TC
Location: 117762 - 118577 (+)
Gene ID: Rep_490_c_5_96
Type: pfam
Location: 118585 - 119790 (+)
Type: pfam
Location: 118585 - 119790 (+)
Gene ID: Rep_490_c_5_97
Type: pfam
Location: 119793 - 120983 (+)
Type: pfam
Location: 119793 - 120983 (+)
Gene ID: Rep_490_c_5_98
Type: CAZyme
Location: 121290 - 122612 (+)
Type: CAZyme
Location: 121290 - 122612 (+)
Gene ID: Rep_490_c_5_99
Type: CAZyme
Location: 122922 - 123887 (+)
Type: CAZyme
Location: 122922 - 123887 (+)
Gene ID: Rep_490_c_5_100
Type:
Location: 123891 - 125393 (+)
Type:
Location: 123891 - 125393 (+)
Gene ID: Rep_490_c_5_101
Type:
Location: 125397 - 126701 (+)
Type:
Location: 125397 - 126701 (+)
Gene ID: Rep_490_c_5_102
Type: CAZyme
Location: 126698 - 127795 (+)
Type: CAZyme
Location: 126698 - 127795 (+)
Gene ID: Rep_490_c_5_103
Type: CAZyme
Location: 127792 - 128943 (+)
Type: CAZyme
Location: 127792 - 128943 (+)
Gene ID: Rep_490_c_5_104
Type: CAZyme
Location: 129089 - 130315 (+)
Type: CAZyme
Location: 129089 - 130315 (+)
Gene ID: Rep_490_c_5_105
Type:
Location: 130281 - 131393 (+)
Type:
Location: 130281 - 131393 (+)
Gene ID: Rep_490_c_5_106
Type: pfam
Location: 131402 - 132559 (+)
Type: pfam
Location: 131402 - 132559 (+)
Gene ID: Rep_490_c_5_107
Type: TC
Location: 132559 - 133251 (+)
Type: TC
Location: 132559 - 133251 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides thetaiotaomicron
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_490_c_5_95 | vegan > omnivore | 1.23442 | 0.02165 |