Cluster: Rep_481_CGC1
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_481
- CGC Family ID: CGCFAM_10509
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_481_c_15 | Rep_481_c_15_5 | 5322 | 7898 | + | GH38 |
| CAZyme | Rep_481_c_15 | Rep_481_c_15_6 | 7909 | 10248 | + | GH92 |
| CAZyme | Rep_481_c_15 | Rep_481_c_15_7 | 10283 | 13369 | + | CBM32 | GH2 |
| NULL(UNKNOWN) | Rep_481_c_15 | Rep_481_c_15_8 | 13384 | 15144 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_481_c_15 | Rep_481_c_15_9 | 15315 | 16727 | + | NHL | NHL | TIG |
| TC | Rep_481_c_15 | Rep_481_c_15_10 | 16749 | 19985 | + | 1.B.14.6.1 |
| TC | Rep_481_c_15 | Rep_481_c_15_11 | 20001 | 21953 | + | 8.A.46.1.5 |
| pfam | Rep_481_c_15 | Rep_481_c_15_12 | 21967 | 22737 | + | DUF3823 | DUF3823_C |
| pfam | Rep_481_c_15 | Rep_481_c_15_13 | 22782 | 24185 | + | DUF5005 |
| CAZyme | Rep_481_c_15 | Rep_481_c_15_14 | 24401 | 26554 | + | GH92 |
| CAZyme | Rep_481_c_15 | Rep_481_c_15_15 | 26601 | 28700 | + | GH130_3 | GH43_34 |
| TC | Rep_481_c_15 | Rep_481_c_15_16 | 28785 | 29372 | - | 2.A.38.1.1 |
| pfam | Rep_481_c_15 | Rep_481_c_15_17 | 29532 | 30452 | - | PseudoU_synth_2 |
| pfam | Rep_481_c_15 | Rep_481_c_15_18 | 30463 | 31836 | - | TRAM | tRNA_U5-meth_tr | Methyltransf_15 | Methyltransf_31 |
| TC | Rep_481_c_15 | Rep_481_c_15_19 | 32091 | 34811 | + | 4.A.2.1.17 |
Gene ID: Rep_481_c_15_5
Type: CAZyme
Location: 5322 - 7898 (+)
Type: CAZyme
Location: 5322 - 7898 (+)
Gene ID: Rep_481_c_15_6
Type: CAZyme
Location: 7909 - 10248 (+)
Type: CAZyme
Location: 7909 - 10248 (+)
Gene ID: Rep_481_c_15_7
Type: CAZyme
Location: 10283 - 13369 (+)
Type: CAZyme
Location: 10283 - 13369 (+)
Gene ID: Rep_481_c_15_8
Type:
Location: 13384 - 15144 (+)
Type:
Location: 13384 - 15144 (+)
Gene ID: Rep_481_c_15_9
Type: pfam
Location: 15315 - 16727 (+)
Type: pfam
Location: 15315 - 16727 (+)
Gene ID: Rep_481_c_15_10
Type: TC
Location: 16749 - 19985 (+)
Type: TC
Location: 16749 - 19985 (+)
Gene ID: Rep_481_c_15_11
Type: TC
Location: 20001 - 21953 (+)
Type: TC
Location: 20001 - 21953 (+)
Gene ID: Rep_481_c_15_12
Type: pfam
Location: 21967 - 22737 (+)
Type: pfam
Location: 21967 - 22737 (+)
Gene ID: Rep_481_c_15_13
Type: pfam
Location: 22782 - 24185 (+)
Type: pfam
Location: 22782 - 24185 (+)
Gene ID: Rep_481_c_15_14
Type: CAZyme
Location: 24401 - 26554 (+)
Type: CAZyme
Location: 24401 - 26554 (+)
Gene ID: Rep_481_c_15_15
Type: CAZyme
Location: 26601 - 28700 (+)
Type: CAZyme
Location: 26601 - 28700 (+)
Gene ID: Rep_481_c_15_16
Type: TC
Location: 28785 - 29372 (-)
Type: TC
Location: 28785 - 29372 (-)
Gene ID: Rep_481_c_15_17
Type: pfam
Location: 29532 - 30452 (-)
Type: pfam
Location: 29532 - 30452 (-)
Gene ID: Rep_481_c_15_18
Type: pfam
Location: 30463 - 31836 (-)
Type: pfam
Location: 30463 - 31836 (-)
Gene ID: Rep_481_c_15_19
Type: TC
Location: 32091 - 34811 (+)
Type: TC
Location: 32091 - 34811 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.