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Cluster: Rep_46_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_46_c_17 Rep_46_c_17_21 18351 20333 - CBM96 | GH50
NULL(UNKNOWN) Rep_46_c_17 Rep_46_c_17_22 20343 21371 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_46_c_17 Rep_46_c_17_23 21500 23107 - SusD_RagB | SusD-like_3
TC Rep_46_c_17 Rep_46_c_17_24 23149 26112 - 1.B.14.6.1
TF Rep_46_c_17 Rep_46_c_17_25 26845 29532 + HTH_AraC
CAZyme Rep_46_c_17 Rep_46_c_17_26 29859 32258 - GH2
TC Rep_46_c_17 Rep_46_c_17_27 32390 34951 - 8.A.3.3.4
TC Rep_46_c_17 Rep_46_c_17_28 34962 35735 - 1.B.18.3.3
Gene ID: Rep_46_c_17_21
Type: CAZyme
Location: 18351 - 20333 (-)
Gene ID: Rep_46_c_17_22
Type:
Location: 20343 - 21371 (-)
Gene ID: Rep_46_c_17_23
Type: pfam
Location: 21500 - 23107 (-)
Gene ID: Rep_46_c_17_24
Type: TC
Location: 23149 - 26112 (-)
Gene ID: Rep_46_c_17_25
Type: TF
Location: 26845 - 29532 (+)
Gene ID: Rep_46_c_17_26
Type: CAZyme
Location: 29859 - 32258 (-)
Gene ID: Rep_46_c_17_27
Type: TC
Location: 32390 - 34951 (-)
Gene ID: Rep_46_c_17_28
Type: TC
Location: 34962 - 35735 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Paludibacteraceae
→
Genus
RF16
→
Species
RF16 sp900542355

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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