Cluster: Rep_456_CGC93
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_11291
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_59 | Rep_456_c_59_1 | 251 | 2464 | + | GH3 |
| pfam | Rep_456_c_59 | Rep_456_c_59_2 | 2780 | 3286 | + | HU-HIG |
| TF | Rep_456_c_59 | Rep_456_c_59_3 | 3434 | 4615 | - | HTH_AraC | HTH_AraC |
| CAZyme | Rep_456_c_59 | Rep_456_c_59_4 | 4787 | 5659 | + | GH2 |
| pfam | Rep_456_c_59 | Rep_456_c_59_5 | 5763 | 6458 | + | DUF4982 |
| pfam | Rep_456_c_59 | Rep_456_c_59_6 | 7155 | 7634 | + | HU-HIG |
| CAZyme | Rep_456_c_59 | Rep_456_c_59_7 | 7922 | 10090 | + | GH95 |
| STP | Rep_456_c_59 | Rep_456_c_59_8 | 10117 | 10698 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | Rep_456_c_59 | Rep_456_c_59_9 | 10849 | 12054 | + | FecR |
| TC | Rep_456_c_59 | Rep_456_c_59_10 | 12177 | 15602 | + | 1.B.14.6.2 |
| pfam | Rep_456_c_59 | Rep_456_c_59_11 | 15614 | 17527 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_456_c_59 | Rep_456_c_59_12 | 17563 | 18963 | + | CBM32 |
| CAZyme | Rep_456_c_59 | Rep_456_c_59_13 | 19126 | 21474 | + | GH92 |
| CAZyme | Rep_456_c_59 | Rep_456_c_59_14 | 21483 | 24584 | + | GH2 |
| NULL(UNKNOWN) | Rep_456_c_59 | Rep_456_c_59_15 | 24536 | 24751 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_456_c_59 | Rep_456_c_59_16 | 24763 | 27228 | + | GH95 |
Gene ID: Rep_456_c_59_1
Type: CAZyme
Location: 251 - 2464 (+)
Type: CAZyme
Location: 251 - 2464 (+)
Gene ID: Rep_456_c_59_2
Type: pfam
Location: 2780 - 3286 (+)
Type: pfam
Location: 2780 - 3286 (+)
Gene ID: Rep_456_c_59_3
Type: TF
Location: 3434 - 4615 (-)
Type: TF
Location: 3434 - 4615 (-)
Gene ID: Rep_456_c_59_4
Type: CAZyme
Location: 4787 - 5659 (+)
Type: CAZyme
Location: 4787 - 5659 (+)
Gene ID: Rep_456_c_59_5
Type: pfam
Location: 5763 - 6458 (+)
Type: pfam
Location: 5763 - 6458 (+)
Gene ID: Rep_456_c_59_6
Type: pfam
Location: 7155 - 7634 (+)
Type: pfam
Location: 7155 - 7634 (+)
Gene ID: Rep_456_c_59_7
Type: CAZyme
Location: 7922 - 10090 (+)
Type: CAZyme
Location: 7922 - 10090 (+)
Gene ID: Rep_456_c_59_8
Type: STP
Location: 10117 - 10698 (+)
Type: STP
Location: 10117 - 10698 (+)
Gene ID: Rep_456_c_59_9
Type: STP
Location: 10849 - 12054 (+)
Type: STP
Location: 10849 - 12054 (+)
Gene ID: Rep_456_c_59_10
Type: TC
Location: 12177 - 15602 (+)
Type: TC
Location: 12177 - 15602 (+)
Gene ID: Rep_456_c_59_11
Type: pfam
Location: 15614 - 17527 (+)
Type: pfam
Location: 15614 - 17527 (+)
Gene ID: Rep_456_c_59_12
Type: CAZyme
Location: 17563 - 18963 (+)
Type: CAZyme
Location: 17563 - 18963 (+)
Gene ID: Rep_456_c_59_13
Type: CAZyme
Location: 19126 - 21474 (+)
Type: CAZyme
Location: 19126 - 21474 (+)
Gene ID: Rep_456_c_59_14
Type: CAZyme
Location: 21483 - 24584 (+)
Type: CAZyme
Location: 21483 - 24584 (+)
Gene ID: Rep_456_c_59_15
Type:
Location: 24536 - 24751 (-)
Type:
Location: 24536 - 24751 (-)
Gene ID: Rep_456_c_59_16
Type: CAZyme
Location: 24763 - 27228 (+)
Type: CAZyme
Location: 24763 - 27228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.