Cluster: Rep_456_CGC90
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_456
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_55 | Rep_456_c_55_1 | 160 | 3162 | + | GH3 |
| CAZyme | Rep_456_c_55 | Rep_456_c_55_2 | 3294 | 6434 | + | GH3 |
| pfam | Rep_456_c_55 | Rep_456_c_55_3 | 6631 | 7260 | - | OMP_b-brl |
| pfam | Rep_456_c_55 | Rep_456_c_55_4 | 7331 | 7963 | - | DUF4136 |
| TC | Rep_456_c_55 | Rep_456_c_55_5 | 8691 | 9692 | - | 8.A.5.1.3 |
| CAZyme | Rep_456_c_55 | Rep_456_c_55_6 | 9979 | 12318 | + | GH3 |
| TF | Rep_456_c_55 | Rep_456_c_55_7 | 12498 | 13385 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_456_c_55 | Rep_456_c_55_8 | 13457 | 14740 | + | CE7 |
| CAZyme | Rep_456_c_55 | Rep_456_c_55_9 | 14767 | 16053 | + | GH5_7 |
| CAZyme | Rep_456_c_55 | Rep_456_c_55_10 | 16055 | 17038 | + | GH5_2 |
| TC | Rep_456_c_55 | Rep_456_c_55_11 | 17202 | 20405 | + | 1.B.14.6.1 |
Gene ID: Rep_456_c_55_1
Type: CAZyme
Location: 160 - 3162 (+)
Type: CAZyme
Location: 160 - 3162 (+)
Gene ID: Rep_456_c_55_2
Type: CAZyme
Location: 3294 - 6434 (+)
Type: CAZyme
Location: 3294 - 6434 (+)
Gene ID: Rep_456_c_55_3
Type: pfam
Location: 6631 - 7260 (-)
Type: pfam
Location: 6631 - 7260 (-)
Gene ID: Rep_456_c_55_4
Type: pfam
Location: 7331 - 7963 (-)
Type: pfam
Location: 7331 - 7963 (-)
Gene ID: Rep_456_c_55_5
Type: TC
Location: 8691 - 9692 (-)
Type: TC
Location: 8691 - 9692 (-)
Gene ID: Rep_456_c_55_6
Type: CAZyme
Location: 9979 - 12318 (+)
Type: CAZyme
Location: 9979 - 12318 (+)
Gene ID: Rep_456_c_55_7
Type: TF
Location: 12498 - 13385 (+)
Type: TF
Location: 12498 - 13385 (+)
Gene ID: Rep_456_c_55_8
Type: CAZyme
Location: 13457 - 14740 (+)
Type: CAZyme
Location: 13457 - 14740 (+)
Gene ID: Rep_456_c_55_9
Type: CAZyme
Location: 14767 - 16053 (+)
Type: CAZyme
Location: 14767 - 16053 (+)
Gene ID: Rep_456_c_55_10
Type: CAZyme
Location: 16055 - 17038 (+)
Type: CAZyme
Location: 16055 - 17038 (+)
Gene ID: Rep_456_c_55_11
Type: TC
Location: 17202 - 20405 (+)
Type: TC
Location: 17202 - 20405 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_55_1 | vegan > omnivore | 1.65630 | 0.02809 |
| Rep_456_c_55_1 | vegetarian > omnivore | 2.21520 | 0.00065 |
| Rep_456_c_55_6 | vegan > omnivore | 1.64315 | 0.02809 |
| Rep_456_c_55_6 | vegetarian > omnivore | 1.75317 | 0.00065 |
| Rep_456_c_55_8 | vegan > omnivore | 1.14933 | 0.01529 |
| Rep_456_c_55_8 | vegetarian > omnivore | 1.50437 | 0.00065 |
| Rep_456_c_55_10 | vegan > omnivore | 1.43205 | 0.02809 |
| Rep_456_c_55_10 | vegetarian > omnivore | 1.16845 | 0.00065 |