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Cluster: Rep_456_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_2 Rep_456_c_2_4 3593 5608 - GH154
TF Rep_456_c_2 Rep_456_c_2_5 5972 10183 + HTH_AraC
NULL(UNKNOWN) Rep_456_c_2 Rep_456_c_2_6 10526 11083 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_456_c_2 Rep_456_c_2_7 11144 14287 + 1.B.14.6.1
pfam Rep_456_c_2 Rep_456_c_2_8 14320 16233 + SusD_RagB | SusD-like_3
TC Rep_456_c_2 Rep_456_c_2_9 16272 19292 + 1.B.14.6.1
pfam Rep_456_c_2 Rep_456_c_2_10 19333 21006 + SusD_RagB | SusD-like_3
CAZyme Rep_456_c_2 Rep_456_c_2_11 21034 21930 + CBM32
CAZyme Rep_456_c_2 Rep_456_c_2_12 21950 23419 + GH16_3
NULL(UNKNOWN) Rep_456_c_2 Rep_456_c_2_13 23446 24021 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_2 Rep_456_c_2_14 24240 26126 + GH16_3 | GH43_24
TF Rep_456_c_2 Rep_456_c_2_15 26898 31091 + HTH_AraC
TC Rep_456_c_2 Rep_456_c_2_16 31314 34643 + 1.B.14.6.1
pfam Rep_456_c_2 Rep_456_c_2_17 34660 36675 + SusD_RagB | SusD-like_3
CAZyme Rep_456_c_2 Rep_456_c_2_18 36775 37902 + GH43_24
CAZyme Rep_456_c_2 Rep_456_c_2_19 38036 39280 + GH154
CAZyme Rep_456_c_2 Rep_456_c_2_20 39294 40595 + PL42
CAZyme Rep_456_c_2 Rep_456_c_2_21 40786 41910 + GH105
CAZyme Rep_456_c_2 Rep_456_c_2_22 42103 44037 + GH43_19 | GH43_34
CAZyme Rep_456_c_2 Rep_456_c_2_23 44078 47005 + GH43_19 | GH97
CAZyme Rep_456_c_2 Rep_456_c_2_24 47276 49801 + GH51_2
CAZyme Rep_456_c_2 Rep_456_c_2_25 49811 51742 + GH51_2
CAZyme Rep_456_c_2 Rep_456_c_2_26 51870 54965 + GH2
CAZyme Rep_456_c_2 Rep_456_c_2_27 55162 56145 + GH43_17
TF Rep_456_c_2 Rep_456_c_2_28 56342 57223 - HTH_AraC
pfam Rep_456_c_2 Rep_456_c_2_29 57426 58448 + HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_456_c_2 Rep_456_c_2_30 58510 61617 + 2.A.6.2.17
pfam Rep_456_c_2 Rep_456_c_2_31 61640 62926 + OEP | OEP
NULL(UNKNOWN) Rep_456_c_2 Rep_456_c_2_32 63603 63839 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_2 Rep_456_c_2_33 63924 65303 + GH115
pfam Rep_456_c_2 Rep_456_c_2_34 65388 65765 + GH115_C
CAZyme Rep_456_c_2 Rep_456_c_2_35 66087 69407 - GH35 | GH43_24
Gene ID: Rep_456_c_2_4
Type: CAZyme
Location: 3593 - 5608 (-)
Gene ID: Rep_456_c_2_5
Type: TF
Location: 5972 - 10183 (+)
Gene ID: Rep_456_c_2_6
Type:
Location: 10526 - 11083 (+)
Gene ID: Rep_456_c_2_7
Type: TC
Location: 11144 - 14287 (+)
Gene ID: Rep_456_c_2_8
Type: pfam
Location: 14320 - 16233 (+)
Gene ID: Rep_456_c_2_9
Type: TC
Location: 16272 - 19292 (+)
Gene ID: Rep_456_c_2_10
Type: pfam
Location: 19333 - 21006 (+)
Gene ID: Rep_456_c_2_11
Type: CAZyme
Location: 21034 - 21930 (+)
Gene ID: Rep_456_c_2_12
Type: CAZyme
Location: 21950 - 23419 (+)
Gene ID: Rep_456_c_2_13
Type:
Location: 23446 - 24021 (+)
Gene ID: Rep_456_c_2_14
Type: CAZyme
Location: 24240 - 26126 (+)
Gene ID: Rep_456_c_2_15
Type: TF
Location: 26898 - 31091 (+)
Gene ID: Rep_456_c_2_16
Type: TC
Location: 31314 - 34643 (+)
Gene ID: Rep_456_c_2_17
Type: pfam
Location: 34660 - 36675 (+)
Gene ID: Rep_456_c_2_18
Type: CAZyme
Location: 36775 - 37902 (+)
Gene ID: Rep_456_c_2_19
Type: CAZyme
Location: 38036 - 39280 (+)
Gene ID: Rep_456_c_2_20
Type: CAZyme
Location: 39294 - 40595 (+)
Gene ID: Rep_456_c_2_21
Type: CAZyme
Location: 40786 - 41910 (+)
Gene ID: Rep_456_c_2_22
Type: CAZyme
Location: 42103 - 44037 (+)
Gene ID: Rep_456_c_2_23
Type: CAZyme
Location: 44078 - 47005 (+)
Gene ID: Rep_456_c_2_24
Type: CAZyme
Location: 47276 - 49801 (+)
Gene ID: Rep_456_c_2_25
Type: CAZyme
Location: 49811 - 51742 (+)
Gene ID: Rep_456_c_2_26
Type: CAZyme
Location: 51870 - 54965 (+)
Gene ID: Rep_456_c_2_27
Type: CAZyme
Location: 55162 - 56145 (+)
Gene ID: Rep_456_c_2_28
Type: TF
Location: 56342 - 57223 (-)
Gene ID: Rep_456_c_2_29
Type: pfam
Location: 57426 - 58448 (+)
Gene ID: Rep_456_c_2_30
Type: TC
Location: 58510 - 61617 (+)
Gene ID: Rep_456_c_2_31
Type: pfam
Location: 61640 - 62926 (+)
Gene ID: Rep_456_c_2_32
Type:
Location: 63603 - 63839 (+)
Gene ID: Rep_456_c_2_33
Type: CAZyme
Location: 63924 - 65303 (+)
Gene ID: Rep_456_c_2_34
Type: pfam
Location: 65388 - 65765 (+)
Gene ID: Rep_456_c_2_35
Type: CAZyme
Location: 66087 - 69407 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_2_4 vegan > omnivore 1.45007 0.02809
Rep_456_c_2_4 vegetarian > omnivore 1.57982 0.00065
Rep_456_c_2_14 vegetarian > omnivore 1.36820 0.00065
Rep_456_c_2_14 vegan > omnivore 1.26913 0.02809
Rep_456_c_2_18 vegan > omnivore 1.86920 0.02809
Rep_456_c_2_18 vegetarian > omnivore 1.11802 0.00065
Rep_456_c_2_19 vegan > omnivore 1.44175 0.02809
Rep_456_c_2_19 vegetarian > omnivore 1.49730 0.00065
Rep_456_c_2_20 vegetarian > omnivore 1.04978 0.00065
Rep_456_c_2_27 vegetarian > omnivore 1.99017 0.00065
Rep_456_c_2_27 vegan > omnivore 1.32280 0.02809
Rep_456_c_2_29 vegetarian > omnivore 1.53568 0.00065
Rep_456_c_2_29 vegan > omnivore 1.23677 0.02809
Rep_456_c_2_32 vegetarian > omnivore 1.69011 0.00065
Rep_456_c_2_32 vegan > omnivore 2.00765 0.02547
Rep_456_c_2_33 vegan > omnivore 1.13958 0.02809
Rep_456_c_2_34 vegetarian > omnivore 2.21364 0.00065
Rep_456_c_2_34 vegan > omnivore 2.10090 0.02809
Rep_456_c_2_35 vegetarian > omnivore 1.34697 0.00065
Rep_456_c_2_35 vegetarian > vegan 1.30306 0.01199

🧭 Explore Read Mapping of CGC

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