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Cluster: Rep_456_CGC89

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_53 Rep_456_c_53_1 164 2542 - 1.B.14.3.1
CAZyme Rep_456_c_53 Rep_456_c_53_2 2791 4167 - PL1_2
NULL(UNKNOWN) Rep_456_c_53 Rep_456_c_53_3 4173 4364 + NULL(UNKNOWN)
[View Structural Homologs]
sulfatase Rep_456_c_53 Rep_456_c_53_4 4306 6303 - S1_27
TC Rep_456_c_53 Rep_456_c_53_5 6318 9524 - 1.B.14.6.1
sulfatase Rep_456_c_53 Rep_456_c_53_6 9855 11252 - S1_20
CAZyme Rep_456_c_53 Rep_456_c_53_7 11295 12716 - GH28
NULL(UNKNOWN) Rep_456_c_53 Rep_456_c_53_8 13288 15159 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_53 Rep_456_c_53_9 15187 16728 - PL1_2
TC Rep_456_c_53 Rep_456_c_53_10 16871 18961 - 8.A.46.1.3
TC Rep_456_c_53 Rep_456_c_53_11 18981 22211 - 1.B.14.6.1
NULL(UNKNOWN) Rep_456_c_53 Rep_456_c_53_12 22358 22492 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_456_c_53 Rep_456_c_53_13 22484 23410 - HTH_AraC
CAZyme Rep_456_c_53 Rep_456_c_53_14 23539 24837 - GH105
pfam Rep_456_c_53 Rep_456_c_53_15 24862 25671 - Aldolase_II
TC Rep_456_c_53 Rep_456_c_53_16 25773 26804 - 2.A.7.6.1
pfam Rep_456_c_53 Rep_456_c_53_17 26903 28156 - RhaA
pfam Rep_456_c_53 Rep_456_c_53_18 28211 29668 - FGGY_N | FGGY_C
CAZyme Rep_456_c_53 Rep_456_c_53_19 29788 31311 - GH28
CAZyme Rep_456_c_53 Rep_456_c_53_20 31349 33178 - PL11
CAZyme Rep_456_c_53 Rep_456_c_53_21 33317 36133 - GH106
CAZyme Rep_456_c_53 Rep_456_c_53_22 36142 38673 - CE20 | GH105
Gene ID: Rep_456_c_53_1
Type: TC
Location: 164 - 2542 (-)
Gene ID: Rep_456_c_53_2
Type: CAZyme
Location: 2791 - 4167 (-)
Gene ID: Rep_456_c_53_3
Type:
Location: 4173 - 4364 (+)
Gene ID: Rep_456_c_53_4
Type: sulfatase
Location: 4306 - 6303 (-)
Gene ID: Rep_456_c_53_5
Type: TC
Location: 6318 - 9524 (-)
Gene ID: Rep_456_c_53_6
Type: sulfatase
Location: 9855 - 11252 (-)
Gene ID: Rep_456_c_53_7
Type: CAZyme
Location: 11295 - 12716 (-)
Gene ID: Rep_456_c_53_8
Type:
Location: 13288 - 15159 (-)
Gene ID: Rep_456_c_53_9
Type: CAZyme
Location: 15187 - 16728 (-)
Gene ID: Rep_456_c_53_10
Type: TC
Location: 16871 - 18961 (-)
Gene ID: Rep_456_c_53_11
Type: TC
Location: 18981 - 22211 (-)
Gene ID: Rep_456_c_53_12
Type:
Location: 22358 - 22492 (+)
Gene ID: Rep_456_c_53_13
Type: TF
Location: 22484 - 23410 (-)
Gene ID: Rep_456_c_53_14
Type: CAZyme
Location: 23539 - 24837 (-)
Gene ID: Rep_456_c_53_15
Type: pfam
Location: 24862 - 25671 (-)
Gene ID: Rep_456_c_53_16
Type: TC
Location: 25773 - 26804 (-)
Gene ID: Rep_456_c_53_17
Type: pfam
Location: 26903 - 28156 (-)
Gene ID: Rep_456_c_53_18
Type: pfam
Location: 28211 - 29668 (-)
Gene ID: Rep_456_c_53_19
Type: CAZyme
Location: 29788 - 31311 (-)
Gene ID: Rep_456_c_53_20
Type: CAZyme
Location: 31349 - 33178 (-)
Gene ID: Rep_456_c_53_21
Type: CAZyme
Location: 33317 - 36133 (-)
Gene ID: Rep_456_c_53_22
Type: CAZyme
Location: 36142 - 38673 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_53_14 vegetarian > omnivore 1.09741 0.00065
Rep_456_c_53_16 vegetarian > omnivore 1.37110 0.00065
Rep_456_c_53_18 vegetarian > omnivore 1.37475 0.00065
Rep_456_c_53_22 vegetarian > omnivore 1.01507 0.00065

🧭 Explore Read Mapping of CGC

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