Cluster: Rep_456_CGC88
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_00118
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_456_c_51 | Rep_456_c_51_36 | 32277 | 35291 | + | 1.B.14.6.1 |
| TC | Rep_456_c_51 | Rep_456_c_51_37 | 35319 | 37049 | + | 8.A.46.1.1 |
| NULL(UNKNOWN) | Rep_456_c_51 | Rep_456_c_51_38 | 37273 | 38145 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_456_c_51 | Rep_456_c_51_39 | 38164 | 39555 | + | GH27 |
Gene ID: Rep_456_c_51_36
Type: TC
Location: 32277 - 35291 (+)
Type: TC
Location: 32277 - 35291 (+)
Gene ID: Rep_456_c_51_37
Type: TC
Location: 35319 - 37049 (+)
Type: TC
Location: 35319 - 37049 (+)
Gene ID: Rep_456_c_51_38
Type:
Location: 37273 - 38145 (+)
Type:
Location: 37273 - 38145 (+)
Gene ID: Rep_456_c_51_39
Type: CAZyme
Location: 38164 - 39555 (+)
Type: CAZyme
Location: 38164 - 39555 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_51_36 | vegan > omnivore | 1.99111 | 0.02809 |
| Rep_456_c_51_36 | vegetarian > omnivore | 2.24769 | 0.00065 |
| Rep_456_c_51_37 | vegan > omnivore | 1.29459 | 0.02809 |
| Rep_456_c_51_37 | vegetarian > omnivore | 1.67803 | 0.00065 |
| Rep_456_c_51_38 | vegan > omnivore | 1.64162 | 0.02809 |
| Rep_456_c_51_38 | vegetarian > omnivore | 1.69913 | 0.00065 |