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Cluster: Rep_456_CGC85

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_48 Rep_456_c_48_10 19722 23126 + 1.B.14.6.1
pfam Rep_456_c_48 Rep_456_c_48_11 23156 25237 + SusD_RagB | SusD-like_3
CAZyme Rep_456_c_48 Rep_456_c_48_12 25418 27145 + PL1_2
pfam Rep_456_c_48 Rep_456_c_48_13 27151 27819 + DUF3826
CAZyme Rep_456_c_48 Rep_456_c_48_14 28003 28932 + GH43_18
CAZyme Rep_456_c_48 Rep_456_c_48_15 28954 32277 + GH142 | GH143
CAZyme Rep_456_c_48 Rep_456_c_48_16 32306 35155 + CBM67 | GH78
CAZyme Rep_456_c_48 Rep_456_c_48_17 35167 36525 + GH28
CAZyme Rep_456_c_48 Rep_456_c_48_18 36544 38505 + CE19
CAZyme Rep_456_c_48 Rep_456_c_48_19 38584 42450 - CBM67 | GH33 | GH78
Gene ID: Rep_456_c_48_10
Type: TC
Location: 19722 - 23126 (+)
Gene ID: Rep_456_c_48_11
Type: pfam
Location: 23156 - 25237 (+)
Gene ID: Rep_456_c_48_12
Type: CAZyme
Location: 25418 - 27145 (+)
Gene ID: Rep_456_c_48_13
Type: pfam
Location: 27151 - 27819 (+)
Gene ID: Rep_456_c_48_14
Type: CAZyme
Location: 28003 - 28932 (+)
Gene ID: Rep_456_c_48_15
Type: CAZyme
Location: 28954 - 32277 (+)
Gene ID: Rep_456_c_48_16
Type: CAZyme
Location: 32306 - 35155 (+)
Gene ID: Rep_456_c_48_17
Type: CAZyme
Location: 35167 - 36525 (+)
Gene ID: Rep_456_c_48_18
Type: CAZyme
Location: 36544 - 38505 (+)
Gene ID: Rep_456_c_48_19
Type: CAZyme
Location: 38584 - 42450 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_48_18 vegetarian > omnivore 1.08749 0.00065
Rep_456_c_48_19 vegan > omnivore 1.28203 0.02809
Rep_456_c_48_19 vegetarian > omnivore 1.61072 0.00065

🧭 Explore Read Mapping of CGC

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