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Cluster: Rep_456_CGC81

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_44 Rep_456_c_44_7 6591 8297 + 3.A.3.7.2
TC Rep_456_c_44 Rep_456_c_44_8 8328 10379 + 3.A.3.7.2
TC Rep_456_c_44 Rep_456_c_44_9 10392 10967 + 3.A.3.7.2
NULL(UNKNOWN) Rep_456_c_44 Rep_456_c_44_10 11096 11845 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_456_c_44 Rep_456_c_44_11 11948 13072 + KdpD
TC Rep_456_c_44 Rep_456_c_44_12 13094 14533 + 2.A.21.9.1
peptidase Rep_456_c_44 Rep_456_c_44_13 14613 16862 - S09.UPB
CAZyme Rep_456_c_44 Rep_456_c_44_14 16876 19281 - GH127
CAZyme Rep_456_c_44 Rep_456_c_44_15 19304 21469 - CBM32 | GH43_34
NULL(UNKNOWN) Rep_456_c_44 Rep_456_c_44_16 21469 21702 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_44 Rep_456_c_44_17 21837 24563 - GH97
CAZyme Rep_456_c_44 Rep_456_c_44_18 25044 27482 + GH127
TC Rep_456_c_44 Rep_456_c_44_19 27551 30583 + 1.B.14.6.1
Gene ID: Rep_456_c_44_7
Type: TC
Location: 6591 - 8297 (+)
Gene ID: Rep_456_c_44_8
Type: TC
Location: 8328 - 10379 (+)
Gene ID: Rep_456_c_44_9
Type: TC
Location: 10392 - 10967 (+)
Gene ID: Rep_456_c_44_10
Type:
Location: 11096 - 11845 (+)
Gene ID: Rep_456_c_44_11
Type: pfam
Location: 11948 - 13072 (+)
Gene ID: Rep_456_c_44_12
Type: TC
Location: 13094 - 14533 (+)
Gene ID: Rep_456_c_44_13
Type: peptidase
Location: 14613 - 16862 (-)
Gene ID: Rep_456_c_44_14
Type: CAZyme
Location: 16876 - 19281 (-)
Gene ID: Rep_456_c_44_15
Type: CAZyme
Location: 19304 - 21469 (-)
Gene ID: Rep_456_c_44_16
Type:
Location: 21469 - 21702 (-)
Gene ID: Rep_456_c_44_17
Type: CAZyme
Location: 21837 - 24563 (-)
Gene ID: Rep_456_c_44_18
Type: CAZyme
Location: 25044 - 27482 (+)
Gene ID: Rep_456_c_44_19
Type: TC
Location: 27551 - 30583 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_44_10 vegetarian > omnivore 1.23583 0.00065
Rep_456_c_44_14 vegetarian > omnivore 1.39580 0.00065
Rep_456_c_44_15 vegan > omnivore 1.44220 0.02809

🧭 Explore Read Mapping of CGC

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