Cluster: Rep_456_CGC80
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_05862
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_42 | Rep_456_c_42_2 | 610 | 2040 | - | GH51_6 |
| pfam | Rep_456_c_42 | Rep_456_c_42_3 | 2069 | 2650 | - | BDI_1685-like_C |
| pfam | Rep_456_c_42 | Rep_456_c_42_4 | 2683 | 3882 | - | DUF5107 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_5 | 3895 | 6297 | - | GH35 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_6 | 6303 | 7697 | - | GH136 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_7 | 7712 | 10006 | - | GH20 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_8 | 10040 | 11575 | - | GH136 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_9 | 11655 | 14399 | - | GH35 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_10 | 14418 | 17858 | - | GH2 | GH43_24 |
| CAZyme | Rep_456_c_42 | Rep_456_c_42_11 | 17890 | 20292 | - | GH2 |
| TC | Rep_456_c_42 | Rep_456_c_42_12 | 20373 | 21926 | - | 8.A.46.1.3 |
| TC | Rep_456_c_42 | Rep_456_c_42_13 | 21945 | 25022 | - | 1.B.14.6.1 |
Gene ID: Rep_456_c_42_2
Type: CAZyme
Location: 610 - 2040 (-)
Type: CAZyme
Location: 610 - 2040 (-)
Gene ID: Rep_456_c_42_3
Type: pfam
Location: 2069 - 2650 (-)
Type: pfam
Location: 2069 - 2650 (-)
Gene ID: Rep_456_c_42_4
Type: pfam
Location: 2683 - 3882 (-)
Type: pfam
Location: 2683 - 3882 (-)
Gene ID: Rep_456_c_42_5
Type: CAZyme
Location: 3895 - 6297 (-)
Type: CAZyme
Location: 3895 - 6297 (-)
Gene ID: Rep_456_c_42_6
Type: CAZyme
Location: 6303 - 7697 (-)
Type: CAZyme
Location: 6303 - 7697 (-)
Gene ID: Rep_456_c_42_7
Type: CAZyme
Location: 7712 - 10006 (-)
Type: CAZyme
Location: 7712 - 10006 (-)
Gene ID: Rep_456_c_42_8
Type: CAZyme
Location: 10040 - 11575 (-)
Type: CAZyme
Location: 10040 - 11575 (-)
Gene ID: Rep_456_c_42_9
Type: CAZyme
Location: 11655 - 14399 (-)
Type: CAZyme
Location: 11655 - 14399 (-)
Gene ID: Rep_456_c_42_10
Type: CAZyme
Location: 14418 - 17858 (-)
Type: CAZyme
Location: 14418 - 17858 (-)
Gene ID: Rep_456_c_42_11
Type: CAZyme
Location: 17890 - 20292 (-)
Type: CAZyme
Location: 17890 - 20292 (-)
Gene ID: Rep_456_c_42_12
Type: TC
Location: 20373 - 21926 (-)
Type: TC
Location: 20373 - 21926 (-)
Gene ID: Rep_456_c_42_13
Type: TC
Location: 21945 - 25022 (-)
Type: TC
Location: 21945 - 25022 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_42_2 | vegan > omnivore | 2.48331 | 0.02809 |
| Rep_456_c_42_2 | vegetarian > omnivore | 1.31116 | 0.00065 |
| Rep_456_c_42_3 | vegan > omnivore | 2.33055 | 0.02809 |
| Rep_456_c_42_4 | vegan > omnivore | 2.46146 | 0.02809 |
| Rep_456_c_42_5 | vegan > omnivore | 2.66146 | 0.02809 |
| Rep_456_c_42_6 | vegan > omnivore | 2.90996 | 0.02809 |
| Rep_456_c_42_7 | vegan > omnivore | 2.73509 | 0.02809 |
| Rep_456_c_42_8 | vegan > omnivore | 2.84021 | 0.02809 |
| Rep_456_c_42_9 | vegan > omnivore | 2.24287 | 0.02809 |
| Rep_456_c_42_10 | vegan > omnivore | 2.10195 | 0.02809 |
| Rep_456_c_42_11 | vegan > omnivore | 1.46629 | 0.02809 |
| Rep_456_c_42_12 | vegan > omnivore | 2.21031 | 0.02809 |
| Rep_456_c_42_13 | vegetarian > omnivore | 1.33567 | 0.00065 |
| Rep_456_c_42_13 | vegan > omnivore | 2.79347 | 0.02809 |