Cluster: Rep_456_CGC77
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 9
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_01055
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_456_c_40 | Rep_456_c_40_19 | 27512 | 31504 | + | 9.A.25.1.1 |
| pfam | Rep_456_c_40 | Rep_456_c_40_20 | 31808 | 32551 | + | DAHP_synth_1 |
| TC | Rep_456_c_40 | Rep_456_c_40_21 | 32559 | 34964 | + | 9.B.14.3.1 |
| pfam | Rep_456_c_40 | Rep_456_c_40_22 | 35563 | 36345 | + | DUF4469 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_23 | 36462 | 37601 | + | GH105 |
| TF | Rep_456_c_40 | Rep_456_c_40_24 | 37645 | 41733 | + | HTH_AraC |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_25 | 41848 | 43848 | + | GH105 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_26 | 43880 | 45103 | + | GH88 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_27 | 45150 | 47564 | + | GH2 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_28 | 47584 | 48735 | + | PL38 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_29 | 48753 | 50060 | + | GH105 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_30 | 50067 | 52238 | + | PL8_3 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_31 | 52348 | 54618 | + | GH95 |
| CAZyme | Rep_456_c_40 | Rep_456_c_40_32 | 54633 | 56189 | + | PL29 |
Gene ID: Rep_456_c_40_19
Type: TC
Location: 27512 - 31504 (+)
Type: TC
Location: 27512 - 31504 (+)
Gene ID: Rep_456_c_40_20
Type: pfam
Location: 31808 - 32551 (+)
Type: pfam
Location: 31808 - 32551 (+)
Gene ID: Rep_456_c_40_21
Type: TC
Location: 32559 - 34964 (+)
Type: TC
Location: 32559 - 34964 (+)
Gene ID: Rep_456_c_40_22
Type: pfam
Location: 35563 - 36345 (+)
Type: pfam
Location: 35563 - 36345 (+)
Gene ID: Rep_456_c_40_23
Type: CAZyme
Location: 36462 - 37601 (+)
Type: CAZyme
Location: 36462 - 37601 (+)
Gene ID: Rep_456_c_40_24
Type: TF
Location: 37645 - 41733 (+)
Type: TF
Location: 37645 - 41733 (+)
Gene ID: Rep_456_c_40_25
Type: CAZyme
Location: 41848 - 43848 (+)
Type: CAZyme
Location: 41848 - 43848 (+)
Gene ID: Rep_456_c_40_26
Type: CAZyme
Location: 43880 - 45103 (+)
Type: CAZyme
Location: 43880 - 45103 (+)
Gene ID: Rep_456_c_40_27
Type: CAZyme
Location: 45150 - 47564 (+)
Type: CAZyme
Location: 45150 - 47564 (+)
Gene ID: Rep_456_c_40_28
Type: CAZyme
Location: 47584 - 48735 (+)
Type: CAZyme
Location: 47584 - 48735 (+)
Gene ID: Rep_456_c_40_29
Type: CAZyme
Location: 48753 - 50060 (+)
Type: CAZyme
Location: 48753 - 50060 (+)
Gene ID: Rep_456_c_40_30
Type: CAZyme
Location: 50067 - 52238 (+)
Type: CAZyme
Location: 50067 - 52238 (+)
Gene ID: Rep_456_c_40_31
Type: CAZyme
Location: 52348 - 54618 (+)
Type: CAZyme
Location: 52348 - 54618 (+)
Gene ID: Rep_456_c_40_32
Type: CAZyme
Location: 54633 - 56189 (+)
Type: CAZyme
Location: 54633 - 56189 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_40_19 | vegan > omnivore | 1.32575 | 0.02809 |
| Rep_456_c_40_19 | vegetarian > vegan | 1.05027 | 0.01054 |
| Rep_456_c_40_19 | vegetarian > omnivore | 2.37602 | 0.00065 |
| Rep_456_c_40_20 | vegan > omnivore | 1.75852 | 0.02809 |
| Rep_456_c_40_20 | vegetarian > omnivore | 2.36537 | 0.00065 |
| Rep_456_c_40_21 | vegetarian > vegan | 1.13711 | 0.00579 |
| Rep_456_c_40_21 | vegan > omnivore | 1.08838 | 0.02809 |
| Rep_456_c_40_21 | vegetarian > omnivore | 2.22549 | 0.00065 |
| Rep_456_c_40_23 | vegetarian > vegan | 1.11839 | 0.01199 |
| Rep_456_c_40_23 | vegetarian > omnivore | 2.17634 | 0.00065 |
| Rep_456_c_40_23 | vegan > omnivore | 1.05796 | 0.02809 |
| Rep_456_c_40_24 | vegetarian > omnivore | 2.90104 | 0.00065 |
| Rep_456_c_40_24 | vegan > omnivore | 1.90587 | 0.02809 |
| Rep_456_c_40_26 | vegan > omnivore | 1.53265 | 0.02809 |
| Rep_456_c_40_26 | vegetarian > omnivore | 2.04708 | 0.00065 |
| Rep_456_c_40_27 | vegetarian > omnivore | 2.39957 | 0.00065 |
| Rep_456_c_40_27 | vegan > omnivore | 1.71966 | 0.02809 |
| Rep_456_c_40_28 | vegetarian > omnivore | 1.59545 | 0.00065 |
| Rep_456_c_40_28 | vegan > omnivore | 1.56258 | 0.02809 |
| Rep_456_c_40_29 | vegetarian > omnivore | 1.84103 | 0.00065 |
| Rep_456_c_40_29 | vegan > omnivore | 1.15368 | 0.02809 |
| Rep_456_c_40_30 | vegan > omnivore | 1.79965 | 0.02809 |
| Rep_456_c_40_30 | vegetarian > omnivore | 2.24446 | 0.00065 |