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Cluster: Rep_456_CGC76

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_37 Rep_456_c_37_37 42521 43342 + 2.A.64.3.2
pfam Rep_456_c_37 Rep_456_c_37_38 43342 46734 + AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30
TC Rep_456_c_37 Rep_456_c_37_39 47200 48717 - 2.A.1.14.25
CAZyme Rep_456_c_37 Rep_456_c_37_40 49019 50239 + GH105
CAZyme Rep_456_c_37 Rep_456_c_37_41 50244 51212 + CE8
STP Rep_456_c_37 Rep_456_c_37_42 51327 51674 - AraC_binding
CAZyme Rep_456_c_37 Rep_456_c_37_43 51822 53588 + CE12 | CE8
CAZyme Rep_456_c_37 Rep_456_c_37_44 53637 54950 + CE7
TC Rep_456_c_37 Rep_456_c_37_45 55216 58557 + 1.B.14.6.1
Gene ID: Rep_456_c_37_37
Type: TC
Location: 42521 - 43342 (+)
Gene ID: Rep_456_c_37_38
Type: pfam
Location: 43342 - 46734 (+)
Gene ID: Rep_456_c_37_39
Type: TC
Location: 47200 - 48717 (-)
Gene ID: Rep_456_c_37_40
Type: CAZyme
Location: 49019 - 50239 (+)
Gene ID: Rep_456_c_37_41
Type: CAZyme
Location: 50244 - 51212 (+)
Gene ID: Rep_456_c_37_42
Type: STP
Location: 51327 - 51674 (-)
Gene ID: Rep_456_c_37_43
Type: CAZyme
Location: 51822 - 53588 (+)
Gene ID: Rep_456_c_37_44
Type: CAZyme
Location: 53637 - 54950 (+)
Gene ID: Rep_456_c_37_45
Type: TC
Location: 55216 - 58557 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_37_40 vegetarian > omnivore 1.27045 0.00065
Rep_456_c_37_42 vegan > omnivore 1.46877 0.02809
Rep_456_c_37_42 vegetarian > omnivore 1.01506 0.00065
Rep_456_c_37_45 vegetarian > omnivore 1.32921 0.00065

🧭 Explore Read Mapping of CGC

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