Cluster: Rep_456_CGC74
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_11290
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_456_c_35 | Rep_456_c_35_22 | 23154 | 24641 | + | 2.A.50.2.1 |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_23 | 24674 | 27010 | - | GH20 |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_24 | 27256 | 29721 | - | GH20 |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_25 | 29732 | 33073 | - | GH105 |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_26 | 33161 | 35305 | - | GH97 |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_27 | 35377 | 37308 | - | PL37 |
| pfam | Rep_456_c_35 | Rep_456_c_35_28 | 37320 | 38765 | - | Sugar_tr | MFS_1 | MFS_1 |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_29 | 38758 | 41628 | - | GH105 | PL35 |
| TC | Rep_456_c_35 | Rep_456_c_35_30 | 41705 | 44629 | - | 1.B.14.12.2 |
| pfam | Rep_456_c_35 | Rep_456_c_35_31 | 44643 | 45422 | - | Glucosamine_iso |
| pfam | Rep_456_c_35 | Rep_456_c_35_32 | 45426 | 46682 | - | Beta-AFase-like_GH127_cat |
| CAZyme | Rep_456_c_35 | Rep_456_c_35_33 | 46731 | 48158 | - | GH28 |
| TF | Rep_456_c_35 | Rep_456_c_35_34 | 48364 | 49509 | + | LacI |
| TF | Rep_456_c_35 | Rep_456_c_35_35 | 49630 | 50466 | - | HTH_AraC |
| TC | Rep_456_c_35 | Rep_456_c_35_36 | 50639 | 51796 | + | 2.A.6.2.47 |
| TC | Rep_456_c_35 | Rep_456_c_35_37 | 51800 | 54994 | + | 2.A.6.2.22 |
| TC | Rep_456_c_35 | Rep_456_c_35_38 | 55228 | 56592 | + | 2.A.6.2.20 |
Gene ID: Rep_456_c_35_22
Type: TC
Location: 23154 - 24641 (+)
Type: TC
Location: 23154 - 24641 (+)
Gene ID: Rep_456_c_35_23
Type: CAZyme
Location: 24674 - 27010 (-)
Type: CAZyme
Location: 24674 - 27010 (-)
Gene ID: Rep_456_c_35_24
Type: CAZyme
Location: 27256 - 29721 (-)
Type: CAZyme
Location: 27256 - 29721 (-)
Gene ID: Rep_456_c_35_25
Type: CAZyme
Location: 29732 - 33073 (-)
Type: CAZyme
Location: 29732 - 33073 (-)
Gene ID: Rep_456_c_35_26
Type: CAZyme
Location: 33161 - 35305 (-)
Type: CAZyme
Location: 33161 - 35305 (-)
Gene ID: Rep_456_c_35_27
Type: CAZyme
Location: 35377 - 37308 (-)
Type: CAZyme
Location: 35377 - 37308 (-)
Gene ID: Rep_456_c_35_28
Type: pfam
Location: 37320 - 38765 (-)
Type: pfam
Location: 37320 - 38765 (-)
Gene ID: Rep_456_c_35_29
Type: CAZyme
Location: 38758 - 41628 (-)
Type: CAZyme
Location: 38758 - 41628 (-)
Gene ID: Rep_456_c_35_30
Type: TC
Location: 41705 - 44629 (-)
Type: TC
Location: 41705 - 44629 (-)
Gene ID: Rep_456_c_35_31
Type: pfam
Location: 44643 - 45422 (-)
Type: pfam
Location: 44643 - 45422 (-)
Gene ID: Rep_456_c_35_32
Type: pfam
Location: 45426 - 46682 (-)
Type: pfam
Location: 45426 - 46682 (-)
Gene ID: Rep_456_c_35_33
Type: CAZyme
Location: 46731 - 48158 (-)
Type: CAZyme
Location: 46731 - 48158 (-)
Gene ID: Rep_456_c_35_34
Type: TF
Location: 48364 - 49509 (+)
Type: TF
Location: 48364 - 49509 (+)
Gene ID: Rep_456_c_35_35
Type: TF
Location: 49630 - 50466 (-)
Type: TF
Location: 49630 - 50466 (-)
Gene ID: Rep_456_c_35_36
Type: TC
Location: 50639 - 51796 (+)
Type: TC
Location: 50639 - 51796 (+)
Gene ID: Rep_456_c_35_37
Type: TC
Location: 51800 - 54994 (+)
Type: TC
Location: 51800 - 54994 (+)
Gene ID: Rep_456_c_35_38
Type: TC
Location: 55228 - 56592 (+)
Type: TC
Location: 55228 - 56592 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_35_35 | vegetarian > omnivore | 1.75698 | 0.00065 |
| Rep_456_c_35_35 | vegetarian > vegan | 1.07639 | 0.01199 |
| Rep_456_c_35_38 | vegetarian > omnivore | 1.73653 | 0.00065 |