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Cluster: Rep_456_CGC73

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_34 Rep_456_c_34_13 17109 18341 + 3.A.1.125.1
CAZyme Rep_456_c_34 Rep_456_c_34_14 18799 22302 + GH106
TF Rep_456_c_34 Rep_456_c_34_15 22388 26440 - HTH_AraC
TC Rep_456_c_34 Rep_456_c_34_16 26967 30041 + 1.B.14.6.1
TC Rep_456_c_34 Rep_456_c_34_17 30062 31786 + 8.A.46.1.6
NULL(UNKNOWN) Rep_456_c_34 Rep_456_c_34_18 31894 32094 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_34 Rep_456_c_34_19 32108 33643 + GH79
CAZyme Rep_456_c_34 Rep_456_c_34_20 33640 35721 + PL8_3
TF Rep_456_c_34 Rep_456_c_34_21 35775 39830 - 0035607
CAZyme Rep_456_c_34 Rep_456_c_34_22 40072 42747 + CBM67 | GH78
TC Rep_456_c_34 Rep_456_c_34_23 43277 46438 + 1.B.14.6.1
TC Rep_456_c_34 Rep_456_c_34_24 46451 48139 + 8.A.46.1.3
NULL(UNKNOWN) Rep_456_c_34 Rep_456_c_34_25 48173 48550 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_34 Rep_456_c_34_26 48624 50054 + GH28
CAZyme Rep_456_c_34 Rep_456_c_34_27 50239 52938 + GH2
CAZyme Rep_456_c_34 Rep_456_c_34_28 52943 55537 + GH2
CAZyme Rep_456_c_34 Rep_456_c_34_29 55563 56753 + GH88
CAZyme Rep_456_c_34 Rep_456_c_34_30 56767 58230 + GH28
CAZyme Rep_456_c_34 Rep_456_c_34_31 58241 63001 + CBM67 | GH78 | PL8_3
TF Rep_456_c_34 Rep_456_c_34_32 63118 63876 + LytTR
TC Rep_456_c_34 Rep_456_c_34_33 63890 64894 + 8.A.59.2.1
Gene ID: Rep_456_c_34_13
Type: TC
Location: 17109 - 18341 (+)
Gene ID: Rep_456_c_34_14
Type: CAZyme
Location: 18799 - 22302 (+)
Gene ID: Rep_456_c_34_15
Type: TF
Location: 22388 - 26440 (-)
Gene ID: Rep_456_c_34_16
Type: TC
Location: 26967 - 30041 (+)
Gene ID: Rep_456_c_34_17
Type: TC
Location: 30062 - 31786 (+)
Gene ID: Rep_456_c_34_18
Type:
Location: 31894 - 32094 (+)
Gene ID: Rep_456_c_34_19
Type: CAZyme
Location: 32108 - 33643 (+)
Gene ID: Rep_456_c_34_20
Type: CAZyme
Location: 33640 - 35721 (+)
Gene ID: Rep_456_c_34_21
Type: TF
Location: 35775 - 39830 (-)
Gene ID: Rep_456_c_34_22
Type: CAZyme
Location: 40072 - 42747 (+)
Gene ID: Rep_456_c_34_23
Type: TC
Location: 43277 - 46438 (+)
Gene ID: Rep_456_c_34_24
Type: TC
Location: 46451 - 48139 (+)
Gene ID: Rep_456_c_34_25
Type:
Location: 48173 - 48550 (+)
Gene ID: Rep_456_c_34_26
Type: CAZyme
Location: 48624 - 50054 (+)
Gene ID: Rep_456_c_34_27
Type: CAZyme
Location: 50239 - 52938 (+)
Gene ID: Rep_456_c_34_28
Type: CAZyme
Location: 52943 - 55537 (+)
Gene ID: Rep_456_c_34_29
Type: CAZyme
Location: 55563 - 56753 (+)
Gene ID: Rep_456_c_34_30
Type: CAZyme
Location: 56767 - 58230 (+)
Gene ID: Rep_456_c_34_31
Type: CAZyme
Location: 58241 - 63001 (+)
Gene ID: Rep_456_c_34_32
Type: TF
Location: 63118 - 63876 (+)
Gene ID: Rep_456_c_34_33
Type: TC
Location: 63890 - 64894 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_34_28 vegan > omnivore 2.10159 0.02809
Rep_456_c_34_28 vegetarian > omnivore 1.42564 0.00065
Rep_456_c_34_29 vegan > omnivore 2.14993 0.02809
Rep_456_c_34_29 vegetarian > omnivore 1.77915 0.00065
Rep_456_c_34_30 vegan > omnivore 2.37561 0.02809
Rep_456_c_34_30 vegetarian > omnivore 2.07649 0.00065
Rep_456_c_34_31 vegan > omnivore 2.04734 0.02809
Rep_456_c_34_31 vegetarian > omnivore 1.80548 0.00065
Rep_456_c_34_33 vegan > omnivore 2.02802 0.02809
Rep_456_c_34_33 vegetarian > omnivore 1.39533 0.00065

🧭 Explore Read Mapping of CGC

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