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Cluster: Rep_456_CGC72

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_33 Rep_456_c_33_12 13134 16286 - 1.B.14.6.1
pfam Rep_456_c_33 Rep_456_c_33_13 16594 17325 - DUF3823 | DUF3823_C
pfam Rep_456_c_33 Rep_456_c_33_14 17347 19299 - SusD_RagB | SusD-like_3
TC Rep_456_c_33 Rep_456_c_33_15 19312 22398 - 1.B.14.6.1
pfam Rep_456_c_33 Rep_456_c_33_16 22430 25918 - Glyco_hydro_38N
NULL(UNKNOWN) Rep_456_c_33 Rep_456_c_33_17 26577 26696 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_456_c_33 Rep_456_c_33_18 26700 27872 - 2.A.1.7.16
sulfatase Rep_456_c_33 Rep_456_c_33_19 27898 29487 - S1_11
CAZyme Rep_456_c_33 Rep_456_c_33_20 29498 31813 - GH92
CAZyme Rep_456_c_33 Rep_456_c_33_21 31869 35024 - GH92
Gene ID: Rep_456_c_33_12
Type: TC
Location: 13134 - 16286 (-)
Gene ID: Rep_456_c_33_13
Type: pfam
Location: 16594 - 17325 (-)
Gene ID: Rep_456_c_33_14
Type: pfam
Location: 17347 - 19299 (-)
Gene ID: Rep_456_c_33_15
Type: TC
Location: 19312 - 22398 (-)
Gene ID: Rep_456_c_33_16
Type: pfam
Location: 22430 - 25918 (-)
Gene ID: Rep_456_c_33_17
Type:
Location: 26577 - 26696 (-)
Gene ID: Rep_456_c_33_18
Type: TC
Location: 26700 - 27872 (-)
Gene ID: Rep_456_c_33_19
Type: sulfatase
Location: 27898 - 29487 (-)
Gene ID: Rep_456_c_33_20
Type: CAZyme
Location: 29498 - 31813 (-)
Gene ID: Rep_456_c_33_21
Type: CAZyme
Location: 31869 - 35024 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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