Cluster: Rep_456_CGC70
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_02733
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_456_c_31 | Rep_456_c_31_32 | 41223 | 43547 | + | 2.A.21.9.2 |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_33 | 43566 | 44789 | - | GH88 |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_34 | 44803 | 46452 | - | CBM91 | GH43_10 |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_35 | 46598 | 48541 | - | GH97 |
| peptidase | Rep_456_c_31 | Rep_456_c_31_36 | 48603 | 49694 | - | S12.UPW |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_37 | 49697 | 51622 | - | GH146 |
| pfam | Rep_456_c_31 | Rep_456_c_31_38 | 52128 | 53726 | - | Alginate_lyase |
| TF | Rep_456_c_31 | Rep_456_c_31_39 | 53924 | 56791 | + | HTH_AraC |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_40 | 56993 | 58213 | + | GH88 |
| STP | Rep_456_c_31 | Rep_456_c_31_41 | 58237 | 58782 | + | Sigma70_r2 | Sigma70_r4_2 |
| TC | Rep_456_c_31 | Rep_456_c_31_42 | 58909 | 61986 | + | 1.B.14.6.1 |
| TC | Rep_456_c_31 | Rep_456_c_31_43 | 61997 | 63823 | + | 8.A.46.1.6 |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_44 | 64027 | 65958 | + | GH97 |
| NULL(UNKNOWN) | Rep_456_c_31 | Rep_456_c_31_45 | 66083 | 67696 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_456_c_31 | Rep_456_c_31_46 | 68013 | 69455 | - | AhpC-TSA | Redoxin | Thioredoxin_8 |
| CAZyme | Rep_456_c_31 | Rep_456_c_31_47 | 69549 | 70934 | - | GH28 |
Gene ID: Rep_456_c_31_32
Type: TC
Location: 41223 - 43547 (+)
Type: TC
Location: 41223 - 43547 (+)
Gene ID: Rep_456_c_31_33
Type: CAZyme
Location: 43566 - 44789 (-)
Type: CAZyme
Location: 43566 - 44789 (-)
Gene ID: Rep_456_c_31_34
Type: CAZyme
Location: 44803 - 46452 (-)
Type: CAZyme
Location: 44803 - 46452 (-)
Gene ID: Rep_456_c_31_35
Type: CAZyme
Location: 46598 - 48541 (-)
Type: CAZyme
Location: 46598 - 48541 (-)
Gene ID: Rep_456_c_31_36
Type: peptidase
Location: 48603 - 49694 (-)
Type: peptidase
Location: 48603 - 49694 (-)
Gene ID: Rep_456_c_31_37
Type: CAZyme
Location: 49697 - 51622 (-)
Type: CAZyme
Location: 49697 - 51622 (-)
Gene ID: Rep_456_c_31_38
Type: pfam
Location: 52128 - 53726 (-)
Type: pfam
Location: 52128 - 53726 (-)
Gene ID: Rep_456_c_31_39
Type: TF
Location: 53924 - 56791 (+)
Type: TF
Location: 53924 - 56791 (+)
Gene ID: Rep_456_c_31_40
Type: CAZyme
Location: 56993 - 58213 (+)
Type: CAZyme
Location: 56993 - 58213 (+)
Gene ID: Rep_456_c_31_41
Type: STP
Location: 58237 - 58782 (+)
Type: STP
Location: 58237 - 58782 (+)
Gene ID: Rep_456_c_31_42
Type: TC
Location: 58909 - 61986 (+)
Type: TC
Location: 58909 - 61986 (+)
Gene ID: Rep_456_c_31_43
Type: TC
Location: 61997 - 63823 (+)
Type: TC
Location: 61997 - 63823 (+)
Gene ID: Rep_456_c_31_44
Type: CAZyme
Location: 64027 - 65958 (+)
Type: CAZyme
Location: 64027 - 65958 (+)
Gene ID: Rep_456_c_31_45
Type:
Location: 66083 - 67696 (-)
Type:
Location: 66083 - 67696 (-)
Gene ID: Rep_456_c_31_46
Type: pfam
Location: 68013 - 69455 (-)
Type: pfam
Location: 68013 - 69455 (-)
Gene ID: Rep_456_c_31_47
Type: CAZyme
Location: 69549 - 70934 (-)
Type: CAZyme
Location: 69549 - 70934 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_31_32 | vegan > omnivore | 1.70620 | 0.02809 |
| Rep_456_c_31_32 | vegetarian > omnivore | 1.84479 | 0.00065 |
| Rep_456_c_31_36 | vegan > omnivore | 1.17702 | 0.02809 |
| Rep_456_c_31_46 | vegan > omnivore | 2.08098 | 0.02809 |
| Rep_456_c_31_46 | vegetarian > omnivore | 2.74388 | 0.00065 |