Cluster: Rep_456_CGC69
🧬 Cluster Details
- Gene Count: 20
- CAZyme Count: 11
- Substrate:
- Genome ID: Rep_456
- CGC Family ID: CGCFAM_01176
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_30 | Rep_456_c_30_2 | 262 | 1224 | + | GH43_31 |
| TF | Rep_456_c_30 | Rep_456_c_30_3 | 1412 | 5437 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_4 | 5973 | 7076 | + | GH105 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_5 | 7128 | 9848 | + | GH2 |
| sulfatase | Rep_456_c_30 | Rep_456_c_30_6 | 9858 | 11720 | + | S1_24 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_7 | 11737 | 12906 | + | GH130_3 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_8 | 12971 | 14077 | + | GH105 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_9 | 14103 | 17075 | + | GH115 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_10 | 17345 | 19891 | + | GH31_15 |
| pfam | Rep_456_c_30 | Rep_456_c_30_11 | 20191 | 22944 | + | Trehalase | Glyco_hydro_63 | MGH1-like_GH |
| TC | Rep_456_c_30 | Rep_456_c_30_12 | 23273 | 26395 | + | 1.B.14.6.1 |
| TC | Rep_456_c_30 | Rep_456_c_30_13 | 26430 | 28250 | + | 8.A.46.1.6 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_14 | 28259 | 29290 | + | GH43_3 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_15 | 29305 | 30282 | + | GH43_3 |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_16 | 30305 | 32326 | + | GH182 |
| NULL(UNKNOWN) | Rep_456_c_30 | Rep_456_c_30_17 | 32353 | 32619 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_456_c_30 | Rep_456_c_30_18 | 32506 | 32916 | - | YbeY |
| TC | Rep_456_c_30 | Rep_456_c_30_19 | 32936 | 34168 | - | 9.B.156.3.1 |
| NULL(UNKNOWN) | Rep_456_c_30 | Rep_456_c_30_20 | 34273 | 34371 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_456_c_30 | Rep_456_c_30_21 | 34402 | 36360 | + | CE20 | CE20 |
Gene ID: Rep_456_c_30_2
Type: CAZyme
Location: 262 - 1224 (+)
Type: CAZyme
Location: 262 - 1224 (+)
Gene ID: Rep_456_c_30_3
Type: TF
Location: 1412 - 5437 (+)
Type: TF
Location: 1412 - 5437 (+)
Gene ID: Rep_456_c_30_4
Type: CAZyme
Location: 5973 - 7076 (+)
Type: CAZyme
Location: 5973 - 7076 (+)
Gene ID: Rep_456_c_30_5
Type: CAZyme
Location: 7128 - 9848 (+)
Type: CAZyme
Location: 7128 - 9848 (+)
Gene ID: Rep_456_c_30_6
Type: sulfatase
Location: 9858 - 11720 (+)
Type: sulfatase
Location: 9858 - 11720 (+)
Gene ID: Rep_456_c_30_7
Type: CAZyme
Location: 11737 - 12906 (+)
Type: CAZyme
Location: 11737 - 12906 (+)
Gene ID: Rep_456_c_30_8
Type: CAZyme
Location: 12971 - 14077 (+)
Type: CAZyme
Location: 12971 - 14077 (+)
Gene ID: Rep_456_c_30_9
Type: CAZyme
Location: 14103 - 17075 (+)
Type: CAZyme
Location: 14103 - 17075 (+)
Gene ID: Rep_456_c_30_10
Type: CAZyme
Location: 17345 - 19891 (+)
Type: CAZyme
Location: 17345 - 19891 (+)
Gene ID: Rep_456_c_30_11
Type: pfam
Location: 20191 - 22944 (+)
Type: pfam
Location: 20191 - 22944 (+)
Gene ID: Rep_456_c_30_12
Type: TC
Location: 23273 - 26395 (+)
Type: TC
Location: 23273 - 26395 (+)
Gene ID: Rep_456_c_30_13
Type: TC
Location: 26430 - 28250 (+)
Type: TC
Location: 26430 - 28250 (+)
Gene ID: Rep_456_c_30_14
Type: CAZyme
Location: 28259 - 29290 (+)
Type: CAZyme
Location: 28259 - 29290 (+)
Gene ID: Rep_456_c_30_15
Type: CAZyme
Location: 29305 - 30282 (+)
Type: CAZyme
Location: 29305 - 30282 (+)
Gene ID: Rep_456_c_30_16
Type: CAZyme
Location: 30305 - 32326 (+)
Type: CAZyme
Location: 30305 - 32326 (+)
Gene ID: Rep_456_c_30_17
Type:
Location: 32353 - 32619 (+)
Type:
Location: 32353 - 32619 (+)
Gene ID: Rep_456_c_30_18
Type: pfam
Location: 32506 - 32916 (-)
Type: pfam
Location: 32506 - 32916 (-)
Gene ID: Rep_456_c_30_19
Type: TC
Location: 32936 - 34168 (-)
Type: TC
Location: 32936 - 34168 (-)
Gene ID: Rep_456_c_30_20
Type:
Location: 34273 - 34371 (+)
Type:
Location: 34273 - 34371 (+)
Gene ID: Rep_456_c_30_21
Type: CAZyme
Location: 34402 - 36360 (+)
Type: CAZyme
Location: 34402 - 36360 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_30_2 | vegan > omnivore | 1.06523 | 0.02809 |
| Rep_456_c_30_3 | vegetarian > omnivore | 1.96369 | 0.00065 |
| Rep_456_c_30_3 | vegan > omnivore | 2.99402 | 0.02809 |
| Rep_456_c_30_4 | vegetarian > omnivore | 1.95708 | 0.00065 |
| Rep_456_c_30_4 | vegan > omnivore | 2.57638 | 0.02809 |
| Rep_456_c_30_6 | vegan > omnivore | 1.50146 | 0.02809 |
| Rep_456_c_30_7 | vegetarian > omnivore | 3.17985 | 0.00065 |
| Rep_456_c_30_7 | vegan > omnivore | 3.62222 | 0.02809 |
| Rep_456_c_30_8 | vegetarian > omnivore | 2.00805 | 0.00065 |
| Rep_456_c_30_8 | vegan > omnivore | 2.17062 | 0.02809 |
| Rep_456_c_30_9 | vegetarian > omnivore | 1.35990 | 0.00065 |
| Rep_456_c_30_9 | vegan > omnivore | 2.02688 | 0.02547 |
| Rep_456_c_30_10 | vegan > omnivore | 1.08608 | 0.02809 |
| Rep_456_c_30_10 | vegetarian > omnivore | 1.24395 | 0.00065 |
| Rep_456_c_30_11 | vegan > omnivore | 1.65415 | 0.02809 |
| Rep_456_c_30_11 | vegetarian > omnivore | 1.02453 | 0.00065 |
| Rep_456_c_30_12 | vegetarian > omnivore | 2.64715 | 0.00065 |
| Rep_456_c_30_12 | vegan > omnivore | 2.97937 | 0.02809 |
| Rep_456_c_30_13 | vegetarian > omnivore | 1.24205 | 0.00065 |
| Rep_456_c_30_13 | vegan > omnivore | 2.41875 | 0.02809 |
| Rep_456_c_30_14 | vegetarian > omnivore | 2.89278 | 0.00065 |
| Rep_456_c_30_14 | vegan > omnivore | 3.49636 | 0.02809 |
| Rep_456_c_30_19 | vegetarian > omnivore | 1.02091 | 0.00065 |
| Rep_456_c_30_20 | vegetarian > omnivore | 3.52772 | 0.00065 |
| Rep_456_c_30_20 | vegan > omnivore | 2.63362 | 0.02809 |
| Rep_456_c_30_21 | vegetarian > omnivore | 1.86778 | 0.00065 |
| Rep_456_c_30_21 | vegan > omnivore | 2.24043 | 0.02809 |