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Cluster: Rep_456_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_29 Rep_456_c_29_34 48611 51031 - GH16_3
CAZyme Rep_456_c_29 Rep_456_c_29_35 51036 52907 - CBM32 | GH29
CAZyme Rep_456_c_29 Rep_456_c_29_36 52933 55992 - GH2
CAZyme Rep_456_c_29 Rep_456_c_29_37 56031 58346 - GH20
sulfatase Rep_456_c_29 Rep_456_c_29_38 58373 59956 - S1_11
pfam Rep_456_c_29 Rep_456_c_29_39 60118 61941 - SusD_RagB | SusD-like_3
TC Rep_456_c_29 Rep_456_c_29_40 61970 65194 - 1.B.14.6.1
Gene ID: Rep_456_c_29_34
Type: CAZyme
Location: 48611 - 51031 (-)
Gene ID: Rep_456_c_29_35
Type: CAZyme
Location: 51036 - 52907 (-)
Gene ID: Rep_456_c_29_36
Type: CAZyme
Location: 52933 - 55992 (-)
Gene ID: Rep_456_c_29_37
Type: CAZyme
Location: 56031 - 58346 (-)
Gene ID: Rep_456_c_29_38
Type: sulfatase
Location: 58373 - 59956 (-)
Gene ID: Rep_456_c_29_39
Type: pfam
Location: 60118 - 61941 (-)
Gene ID: Rep_456_c_29_40
Type: TC
Location: 61970 - 65194 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_29_34 vegetarian > omnivore 1.74034 0.00065
Rep_456_c_29_34 vegetarian > vegan 2.66317 0.00450
Rep_456_c_29_35 vegetarian > vegan 2.20626 0.00450

🧭 Explore Read Mapping of CGC

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