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Cluster: Rep_456_CGC67

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_29 Rep_456_c_29_17 23460 25037 + GH28
pfam Rep_456_c_29 Rep_456_c_29_18 25052 25915 + AP_endonuc_2
CAZyme Rep_456_c_29 Rep_456_c_29_19 25915 27303 + GH28
pfam Rep_456_c_29 Rep_456_c_29_20 27331 30084 + Trehalase | Glyco_hydro_63 | Bac_rhamnosid6H | MGH1-like_GH
TC Rep_456_c_29 Rep_456_c_29_21 30108 33251 + 1.B.14.6.1
TC Rep_456_c_29 Rep_456_c_29_22 33265 34998 + 8.A.46.1.1
pfam Rep_456_c_29 Rep_456_c_29_23 35019 36251 + SusE
CAZyme Rep_456_c_29 Rep_456_c_29_24 36354 38933 + GH13
Gene ID: Rep_456_c_29_17
Type: CAZyme
Location: 23460 - 25037 (+)
Gene ID: Rep_456_c_29_18
Type: pfam
Location: 25052 - 25915 (+)
Gene ID: Rep_456_c_29_19
Type: CAZyme
Location: 25915 - 27303 (+)
Gene ID: Rep_456_c_29_20
Type: pfam
Location: 27331 - 30084 (+)
Gene ID: Rep_456_c_29_21
Type: TC
Location: 30108 - 33251 (+)
Gene ID: Rep_456_c_29_22
Type: TC
Location: 33265 - 34998 (+)
Gene ID: Rep_456_c_29_23
Type: pfam
Location: 35019 - 36251 (+)
Gene ID: Rep_456_c_29_24
Type: CAZyme
Location: 36354 - 38933 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_29_23 vegan > omnivore 2.05296 0.02809
Rep_456_c_29_24 vegan > omnivore 1.93404 0.02809
Rep_456_c_29_24 vegetarian > omnivore 1.33147 0.00065

🧭 Explore Read Mapping of CGC

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