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Cluster: Rep_456_CGC63

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_24 Rep_456_c_24_24 25303 26904 - GH32
pfam Rep_456_c_24 Rep_456_c_24_25 26914 28317 - DUF4960
TC Rep_456_c_24 Rep_456_c_24_26 28340 30073 - 8.A.46.1.5
TC Rep_456_c_24 Rep_456_c_24_27 30092 33199 - 1.B.14.6.1
CAZyme Rep_456_c_24 Rep_456_c_24_28 33490 35292 + GH32
pfam Rep_456_c_24 Rep_456_c_24_29 35409 36281 - Aldose_epim
TC Rep_456_c_24 Rep_456_c_24_30 36486 37646 + 2.A.1.7.17
Gene ID: Rep_456_c_24_24
Type: CAZyme
Location: 25303 - 26904 (-)
Gene ID: Rep_456_c_24_25
Type: pfam
Location: 26914 - 28317 (-)
Gene ID: Rep_456_c_24_26
Type: TC
Location: 28340 - 30073 (-)
Gene ID: Rep_456_c_24_27
Type: TC
Location: 30092 - 33199 (-)
Gene ID: Rep_456_c_24_28
Type: CAZyme
Location: 33490 - 35292 (+)
Gene ID: Rep_456_c_24_29
Type: pfam
Location: 35409 - 36281 (-)
Gene ID: Rep_456_c_24_30
Type: TC
Location: 36486 - 37646 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_24_24 vegetarian > omnivore 1.99124 0.00065
Rep_456_c_24_24 vegetarian > vegan 1.16252 0.01199
Rep_456_c_24_25 vegan > omnivore 1.55685 0.02809
Rep_456_c_24_25 vegetarian > omnivore 2.36187 0.00065
Rep_456_c_24_26 vegan > omnivore 1.91237 0.01529
Rep_456_c_24_26 vegetarian > omnivore 2.61803 0.00065
Rep_456_c_24_29 vegan > omnivore 1.71521 0.02809
Rep_456_c_24_29 vegetarian > omnivore 1.55595 0.00065

🧭 Explore Read Mapping of CGC

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