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Cluster: Rep_456_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_1 Rep_456_c_1_24 25433 28516 + 1.B.14.6.1
pfam Rep_456_c_1 Rep_456_c_1_25 28529 30346 + SusD_RagB | SusD-like_3
NULL(UNKNOWN) Rep_456_c_1 Rep_456_c_1_26 30906 31754 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_1 Rep_456_c_1_27 32630 35857 + GH2
pfam Rep_456_c_1 Rep_456_c_1_28 35976 38039 - NosD | Alginate_lyase | Beta_helix
CAZyme Rep_456_c_1 Rep_456_c_1_29 38061 39536 - CE20
NULL(UNKNOWN) Rep_456_c_1 Rep_456_c_1_30 39741 42254 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_456_c_1 Rep_456_c_1_31 42436 44346 + GH63
CAZyme Rep_456_c_1 Rep_456_c_1_32 44359 47175 + GH31_4
NULL(UNKNOWN) Rep_456_c_1 Rep_456_c_1_33 47172 51221 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_456_c_1 Rep_456_c_1_34 51365 51454 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_456_c_1 Rep_456_c_1_35 51948 55127 + 1.B.14.6.1
pfam Rep_456_c_1 Rep_456_c_1_36 55164 57293 + SusD_RagB | SusD-like_3
pfam Rep_456_c_1 Rep_456_c_1_37 57311 58081 + DUF3823
CAZyme Rep_456_c_1 Rep_456_c_1_38 58417 62106 + GH2
CAZyme Rep_456_c_1 Rep_456_c_1_39 62154 64751 + GH3
CAZyme Rep_456_c_1 Rep_456_c_1_40 64784 68185 + GH2
pfam Rep_456_c_1 Rep_456_c_1_41 68214 71051 + Pect-lyase_RHGA_epim
sulfatase Rep_456_c_1 Rep_456_c_1_42 71582 72874 + S1_15
CAZyme Rep_456_c_1 Rep_456_c_1_43 72878 74275 + CE20
CAZyme Rep_456_c_1 Rep_456_c_1_44 74289 77951 + PL17
CAZyme Rep_456_c_1 Rep_456_c_1_45 78012 80273 + GH92
CAZyme Rep_456_c_1 Rep_456_c_1_46 80283 82643 + GH3
Gene ID: Rep_456_c_1_24
Type: TC
Location: 25433 - 28516 (+)
Gene ID: Rep_456_c_1_25
Type: pfam
Location: 28529 - 30346 (+)
Gene ID: Rep_456_c_1_26
Type:
Location: 30906 - 31754 (-)
Gene ID: Rep_456_c_1_27
Type: CAZyme
Location: 32630 - 35857 (+)
Gene ID: Rep_456_c_1_28
Type: pfam
Location: 35976 - 38039 (-)
Gene ID: Rep_456_c_1_29
Type: CAZyme
Location: 38061 - 39536 (-)
Gene ID: Rep_456_c_1_30
Type:
Location: 39741 - 42254 (+)
Gene ID: Rep_456_c_1_31
Type: CAZyme
Location: 42436 - 44346 (+)
Gene ID: Rep_456_c_1_32
Type: CAZyme
Location: 44359 - 47175 (+)
Gene ID: Rep_456_c_1_33
Type:
Location: 47172 - 51221 (+)
Gene ID: Rep_456_c_1_34
Type:
Location: 51365 - 51454 (-)
Gene ID: Rep_456_c_1_35
Type: TC
Location: 51948 - 55127 (+)
Gene ID: Rep_456_c_1_36
Type: pfam
Location: 55164 - 57293 (+)
Gene ID: Rep_456_c_1_37
Type: pfam
Location: 57311 - 58081 (+)
Gene ID: Rep_456_c_1_38
Type: CAZyme
Location: 58417 - 62106 (+)
Gene ID: Rep_456_c_1_39
Type: CAZyme
Location: 62154 - 64751 (+)
Gene ID: Rep_456_c_1_40
Type: CAZyme
Location: 64784 - 68185 (+)
Gene ID: Rep_456_c_1_41
Type: pfam
Location: 68214 - 71051 (+)
Gene ID: Rep_456_c_1_42
Type: sulfatase
Location: 71582 - 72874 (+)
Gene ID: Rep_456_c_1_43
Type: CAZyme
Location: 72878 - 74275 (+)
Gene ID: Rep_456_c_1_44
Type: CAZyme
Location: 74289 - 77951 (+)
Gene ID: Rep_456_c_1_45
Type: CAZyme
Location: 78012 - 80273 (+)
Gene ID: Rep_456_c_1_46
Type: CAZyme
Location: 80283 - 82643 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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