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Cluster: Rep_456_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_20 Rep_456_c_20_49 61356 63977 - 1.B.14.6.14
NULL(UNKNOWN) Rep_456_c_20 Rep_456_c_20_50 64134 65258 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_456_c_20 Rep_456_c_20_51 65239 66396 - Epimerase_2
TC Rep_456_c_20 Rep_456_c_20_52 66455 67087 + 1.A.62.2.1
peptidase Rep_456_c_20 Rep_456_c_20_53 67178 70078 - M16.019
STP Rep_456_c_20 Rep_456_c_20_54 70344 70847 + Sigma70_r2 | Sigma70_r4_2
TC Rep_456_c_20 Rep_456_c_20_55 71302 73077 + 3.B.1.1.6
STP Rep_456_c_20 Rep_456_c_20_56 73160 75826 - HATPase_c | HisKA | Response_reg
CAZyme Rep_456_c_20 Rep_456_c_20_57 75868 77061 - GT2
Gene ID: Rep_456_c_20_49
Type: TC
Location: 61356 - 63977 (-)
Gene ID: Rep_456_c_20_50
Type:
Location: 64134 - 65258 (+)
Gene ID: Rep_456_c_20_51
Type: pfam
Location: 65239 - 66396 (-)
Gene ID: Rep_456_c_20_52
Type: TC
Location: 66455 - 67087 (+)
Gene ID: Rep_456_c_20_53
Type: peptidase
Location: 67178 - 70078 (-)
Gene ID: Rep_456_c_20_54
Type: STP
Location: 70344 - 70847 (+)
Gene ID: Rep_456_c_20_55
Type: TC
Location: 71302 - 73077 (+)
Gene ID: Rep_456_c_20_56
Type: STP
Location: 73160 - 75826 (-)
Gene ID: Rep_456_c_20_57
Type: CAZyme
Location: 75868 - 77061 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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