Cluster: Rep_456_CGC55
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_456
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_456_c_19 | Rep_456_c_19_52 | 58678 | 60528 | - | GH13_46 |
| STP | Rep_456_c_19 | Rep_456_c_19_53 | 60640 | 62007 | - | TPR_1 |
| TC | Rep_456_c_19 | Rep_456_c_19_54 | 62192 | 63352 | - | 3.B.1.1.2 |
| TC | Rep_456_c_19 | Rep_456_c_19_55 | 63354 | 63779 | - | 3.B.1.1.2 |
| pfam | Rep_456_c_19 | Rep_456_c_19_56 | 63802 | 64734 | - | LTD | OAD_gamma |
| TC | Rep_456_c_19 | Rep_456_c_19_57 | 64767 | 66320 | - | 3.B.1.1.2 |
| STP | Rep_456_c_19 | Rep_456_c_19_58 | 66411 | 66821 | - | Glyoxalase |
| TC | Rep_456_c_19 | Rep_456_c_19_59 | 66966 | 69377 | - | 1.B.14.6.7 |
Gene ID: Rep_456_c_19_52
Type: CAZyme
Location: 58678 - 60528 (-)
Type: CAZyme
Location: 58678 - 60528 (-)
Gene ID: Rep_456_c_19_53
Type: STP
Location: 60640 - 62007 (-)
Type: STP
Location: 60640 - 62007 (-)
Gene ID: Rep_456_c_19_54
Type: TC
Location: 62192 - 63352 (-)
Type: TC
Location: 62192 - 63352 (-)
Gene ID: Rep_456_c_19_55
Type: TC
Location: 63354 - 63779 (-)
Type: TC
Location: 63354 - 63779 (-)
Gene ID: Rep_456_c_19_56
Type: pfam
Location: 63802 - 64734 (-)
Type: pfam
Location: 63802 - 64734 (-)
Gene ID: Rep_456_c_19_57
Type: TC
Location: 64767 - 66320 (-)
Type: TC
Location: 64767 - 66320 (-)
Gene ID: Rep_456_c_19_58
Type: STP
Location: 66411 - 66821 (-)
Type: STP
Location: 66411 - 66821 (-)
Gene ID: Rep_456_c_19_59
Type: TC
Location: 66966 - 69377 (-)
Type: TC
Location: 66966 - 69377 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp900759525
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_456_c_19_53 | vegan > omnivore | 1.09623 | 0.02809 |
| Rep_456_c_19_53 | vegetarian > omnivore | 2.09529 | 0.00065 |
| Rep_456_c_19_59 | vegan > omnivore | 1.21166 | 0.02809 |
| Rep_456_c_19_59 | vegetarian > omnivore | 2.25116 | 0.00065 |
| Rep_456_c_19_59 | vegetarian > vegan | 1.03950 | 0.01199 |