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Cluster: Rep_456_CGC53

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_19 Rep_456_c_19_2 2686 5874 + 1.B.14.6.2
pfam Rep_456_c_19 Rep_456_c_19_3 5897 7441 + SusD_RagB | SusD-like_2 | SusD-like_3
pfam Rep_456_c_19 Rep_456_c_19_4 7472 8995 + PKD | PKD_4
CAZyme Rep_456_c_19 Rep_456_c_19_5 9023 10189 + GH16_3
CAZyme Rep_456_c_19 Rep_456_c_19_6 10196 12448 + GH3
pfam Rep_456_c_19 Rep_456_c_19_7 12538 13818 - Enolase_C | Enolase_N | MR_MLE_C
CAZyme Rep_456_c_19 Rep_456_c_19_8 14070 18554 + GH13_10
NULL(UNKNOWN) Rep_456_c_19 Rep_456_c_19_9 18568 18771 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_456_c_19 Rep_456_c_19_10 18824 19195 - 1.A.43.1.13
CAZyme Rep_456_c_19 Rep_456_c_19_11 19421 21577 + GH97
Gene ID: Rep_456_c_19_2
Type: TC
Location: 2686 - 5874 (+)
Gene ID: Rep_456_c_19_3
Type: pfam
Location: 5897 - 7441 (+)
Gene ID: Rep_456_c_19_4
Type: pfam
Location: 7472 - 8995 (+)
Gene ID: Rep_456_c_19_5
Type: CAZyme
Location: 9023 - 10189 (+)
Gene ID: Rep_456_c_19_6
Type: CAZyme
Location: 10196 - 12448 (+)
Gene ID: Rep_456_c_19_7
Type: pfam
Location: 12538 - 13818 (-)
Gene ID: Rep_456_c_19_8
Type: CAZyme
Location: 14070 - 18554 (+)
Gene ID: Rep_456_c_19_9
Type:
Location: 18568 - 18771 (+)
Gene ID: Rep_456_c_19_10
Type: TC
Location: 18824 - 19195 (-)
Gene ID: Rep_456_c_19_11
Type: CAZyme
Location: 19421 - 21577 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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