dbCAN HGM

Cluster: Rep_456_CGC52

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_456_c_18	Rep_456_c_18_50	83800	86961	-	1.B.14.6.1
TC	Rep_456_c_18	Rep_456_c_18_51	87436	90504	+	1.B.14.6.1
pfam	Rep_456_c_18	Rep_456_c_18_52	90578	91999	+	SusD_RagB \| SusD-like_3
CAZyme	Rep_456_c_18	Rep_456_c_18_53	92107	94428	+	GH3
pfam	Rep_456_c_18	Rep_456_c_18_54	94455	95315	+	Exo_endo_phos
CAZyme	Rep_456_c_18	Rep_456_c_18_55	95324	96646	+	GH144
STP	Rep_456_c_18	Rep_456_c_18_56	96845	99673	+	Y_Y_Y
CAZyme	Rep_456_c_18	Rep_456_c_18_57	99800	101020	+	CE15

Gene ID: Rep_456_c_18_50
Type: TC
Location: 83800 - 86961 (-)

Gene ID: Rep_456_c_18_51
Type: TC
Location: 87436 - 90504 (+)

Gene ID: Rep_456_c_18_52
Type: pfam
Location: 90578 - 91999 (+)

Gene ID: Rep_456_c_18_53
Type: CAZyme
Location: 92107 - 94428 (+)

Gene ID: Rep_456_c_18_54
Type: pfam
Location: 94455 - 95315 (+)

Gene ID: Rep_456_c_18_55
Type: CAZyme
Location: 95324 - 96646 (+)

Gene ID: Rep_456_c_18_56
Type: STP
Location: 96845 - 99673 (+)

Gene ID: Rep_456_c_18_57
Type: CAZyme
Location: 99800 - 101020 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_456_c_18_56	vegan > omnivore	1.62392	0.02809
Rep_456_c_18_56	vegetarian > omnivore	2.03114	0.00065
Rep_456_c_18_57	vegan > omnivore	1.51110	0.02809
Rep_456_c_18_57	vegetarian > omnivore	2.66975	0.00065
Rep_456_c_18_57	vegetarian > vegan	1.15865	0.01199

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_456_c_18_56	vegan > omnivore	1.61946	0.00035
Rep_456_c_18_57	vegan > omnivore	1.11291	0.00035