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Cluster: Rep_456_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_456_c_18 Rep_456_c_18_25 38968 42006 + 1.B.14.6.1
pfam Rep_456_c_18 Rep_456_c_18_26 42040 43560 + SusD_RagB | SusD-like_2 | SusD-like_3
CAZyme Rep_456_c_18 Rep_456_c_18_27 43795 46149 + GH3
CAZyme Rep_456_c_18 Rep_456_c_18_28 46184 47509 + GH144
CAZyme Rep_456_c_18 Rep_456_c_18_29 47640 49838 - GH29
CAZyme Rep_456_c_18 Rep_456_c_18_30 49844 52288 - GH95
pfam Rep_456_c_18 Rep_456_c_18_31 52296 52697 - rhaM
CAZyme Rep_456_c_18 Rep_456_c_18_32 52720 56283 - GH106
CAZyme Rep_456_c_18 Rep_456_c_18_33 56305 58944 - GH3
CAZyme Rep_456_c_18 Rep_456_c_18_34 58968 60428 - GH28
TC Rep_456_c_18 Rep_456_c_18_35 60509 62305 - 8.A.46.1.6
TC Rep_456_c_18 Rep_456_c_18_36 62319 65309 - 1.B.14.6.1
Gene ID: Rep_456_c_18_25
Type: TC
Location: 38968 - 42006 (+)
Gene ID: Rep_456_c_18_26
Type: pfam
Location: 42040 - 43560 (+)
Gene ID: Rep_456_c_18_27
Type: CAZyme
Location: 43795 - 46149 (+)
Gene ID: Rep_456_c_18_28
Type: CAZyme
Location: 46184 - 47509 (+)
Gene ID: Rep_456_c_18_29
Type: CAZyme
Location: 47640 - 49838 (-)
Gene ID: Rep_456_c_18_30
Type: CAZyme
Location: 49844 - 52288 (-)
Gene ID: Rep_456_c_18_31
Type: pfam
Location: 52296 - 52697 (-)
Gene ID: Rep_456_c_18_32
Type: CAZyme
Location: 52720 - 56283 (-)
Gene ID: Rep_456_c_18_33
Type: CAZyme
Location: 56305 - 58944 (-)
Gene ID: Rep_456_c_18_34
Type: CAZyme
Location: 58968 - 60428 (-)
Gene ID: Rep_456_c_18_35
Type: TC
Location: 60509 - 62305 (-)
Gene ID: Rep_456_c_18_36
Type: TC
Location: 62319 - 65309 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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