dbCAN HGM

Cluster: Rep_456_CGC50

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_456_c_18	Rep_456_c_18_2	491	3598	+	1.B.14.6.2
TC	Rep_456_c_18	Rep_456_c_18_3	3612	5264	+	8.A.46.2.2
NULL(UNKNOWN)	Rep_456_c_18	Rep_456_c_18_4	5391	7205	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	Rep_456_c_18	Rep_456_c_18_5	7183	8289	-	GHL10 \| DUF4015
CAZyme	Rep_456_c_18	Rep_456_c_18_6	8468	9634	+	GH171
TC	Rep_456_c_18	Rep_456_c_18_7	9669	11117	+	2.A.21.3.7
NULL(UNKNOWN)	Rep_456_c_18	Rep_456_c_18_8	11140	14199	+	NULL(UNKNOWN) [View Structural Homologs]
pfam	Rep_456_c_18	Rep_456_c_18_9	14214	16073	+	Metallophos \| PQQ \| PQQ \| PQQ \| PQQ_2 \| PQQ_2 \| PQQ_2 \| Beta-prop_ACSF4 \| Beta-prop_ACSF4 \| Beta-prop_ACSF4 \| Beta-prop_ACSF4
CAZyme	Rep_456_c_18	Rep_456_c_18_10	16106	17569	+	GT2

Gene ID: Rep_456_c_18_2
Type: TC
Location: 491 - 3598 (+)

Gene ID: Rep_456_c_18_3
Type: TC
Location: 3612 - 5264 (+)

Gene ID: Rep_456_c_18_4
Type:
Location: 5391 - 7205 (+)

Gene ID: Rep_456_c_18_5
Type: pfam
Location: 7183 - 8289 (-)

Gene ID: Rep_456_c_18_6
Type: CAZyme
Location: 8468 - 9634 (+)

Gene ID: Rep_456_c_18_7
Type: TC
Location: 9669 - 11117 (+)

Gene ID: Rep_456_c_18_8
Type:
Location: 11140 - 14199 (+)

Gene ID: Rep_456_c_18_9
Type: pfam
Location: 14214 - 16073 (+)

Gene ID: Rep_456_c_18_10
Type: CAZyme
Location: 16106 - 17569 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_456_c_18_3	vegan > omnivore	1.30795	0.02809
Rep_456_c_18_3	vegetarian > omnivore	1.70860	0.00065
Rep_456_c_18_5	vegan > omnivore	2.46659	0.02809
Rep_456_c_18_5	vegetarian > omnivore	2.56756	0.00065

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_456_c_18_2	vegan > omnivore	1.00040	0.00035
Rep_456_c_18_4	vegan > omnivore	1.08100	0.00035
Rep_456_c_18_5	vegan > omnivore	1.00093	0.00035