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Cluster: Rep_456_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_456_c_17 Rep_456_c_17_47 70193 72142 + GH5_21
CAZyme Rep_456_c_17 Rep_456_c_17_48 72364 73245 + CE1
CAZyme Rep_456_c_17 Rep_456_c_17_49 73279 76503 + CE6 | GH95
TF Rep_456_c_17 Rep_456_c_17_50 76568 80668 - 0035607
CAZyme Rep_456_c_17 Rep_456_c_17_51 80945 82975 - GH67
pfam Rep_456_c_17 Rep_456_c_17_52 82997 83977 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme Rep_456_c_17 Rep_456_c_17_53 83995 84972 - GH43_1
CAZyme Rep_456_c_17 Rep_456_c_17_54 84994 87648 - CBM91 | GH10 | GH43_12
TC Rep_456_c_17 Rep_456_c_17_55 87998 89494 - 2.A.2.3.4
CAZyme Rep_456_c_17 Rep_456_c_17_56 89568 91238 - CE20 | CE20
CAZyme Rep_456_c_17 Rep_456_c_17_57 91320 93047 - GH35
CAZyme Rep_456_c_17 Rep_456_c_17_58 93317 95632 - GH10
pfam Rep_456_c_17 Rep_456_c_17_59 95665 97068 - SGBP_B_XBD
pfam Rep_456_c_17 Rep_456_c_17_60 97084 98772 - SusD_RagB | SusD-like_3
TC Rep_456_c_17 Rep_456_c_17_61 98795 101947 - 1.B.14.6.1
Gene ID: Rep_456_c_17_47
Type: CAZyme
Location: 70193 - 72142 (+)
Gene ID: Rep_456_c_17_48
Type: CAZyme
Location: 72364 - 73245 (+)
Gene ID: Rep_456_c_17_49
Type: CAZyme
Location: 73279 - 76503 (+)
Gene ID: Rep_456_c_17_50
Type: TF
Location: 76568 - 80668 (-)
Gene ID: Rep_456_c_17_51
Type: CAZyme
Location: 80945 - 82975 (-)
Gene ID: Rep_456_c_17_52
Type: pfam
Location: 82997 - 83977 (-)
Gene ID: Rep_456_c_17_53
Type: CAZyme
Location: 83995 - 84972 (-)
Gene ID: Rep_456_c_17_54
Type: CAZyme
Location: 84994 - 87648 (-)
Gene ID: Rep_456_c_17_55
Type: TC
Location: 87998 - 89494 (-)
Gene ID: Rep_456_c_17_56
Type: CAZyme
Location: 89568 - 91238 (-)
Gene ID: Rep_456_c_17_57
Type: CAZyme
Location: 91320 - 93047 (-)
Gene ID: Rep_456_c_17_58
Type: CAZyme
Location: 93317 - 95632 (-)
Gene ID: Rep_456_c_17_59
Type: pfam
Location: 95665 - 97068 (-)
Gene ID: Rep_456_c_17_60
Type: pfam
Location: 97084 - 98772 (-)
Gene ID: Rep_456_c_17_61
Type: TC
Location: 98795 - 101947 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_456_c_17_48 vegan > omnivore 2.35045 0.02809
Rep_456_c_17_48 vegetarian > omnivore 2.59341 0.00065
Rep_456_c_17_49 vegan > omnivore 1.82213 0.02809
Rep_456_c_17_49 vegetarian > omnivore 2.68041 0.00065
Rep_456_c_17_50 vegan > omnivore 2.33075 0.02809
Rep_456_c_17_50 vegetarian > omnivore 2.53936 0.00065
Rep_456_c_17_52 vegetarian > vegan 1.35545 0.01199
Rep_456_c_17_52 vegetarian > omnivore 2.07105 0.00065
Rep_456_c_17_54 vegetarian > omnivore 2.61299 0.00065
Rep_456_c_17_54 vegan > omnivore 1.12450 0.02809
Rep_456_c_17_54 vegetarian > vegan 1.48849 0.01199
Rep_456_c_17_55 vegetarian > vegan 1.08790 0.00579
Rep_456_c_17_56 vegetarian > vegan 1.34179 0.00579
Rep_456_c_17_56 vegetarian > omnivore 2.68030 0.00065
Rep_456_c_17_56 vegan > omnivore 1.33852 0.02809
Rep_456_c_17_57 vegetarian > omnivore 1.19764 0.00065
Rep_456_c_17_57 vegetarian > vegan 1.41483 0.01199
Rep_456_c_17_58 vegetarian > omnivore 1.33788 0.00065
Rep_456_c_17_58 vegan > omnivore 1.25346 0.02809
Rep_456_c_17_59 vegetarian > omnivore 1.75913 0.00065
Rep_456_c_17_59 vegan > omnivore 1.03182 0.02809
Rep_456_c_17_60 vegetarian > omnivore 2.25392 0.00065
Rep_456_c_17_60 vegan > omnivore 1.71469 0.02809
Rep_456_c_17_61 vegetarian > omnivore 1.61306 0.00065
Rep_456_c_17_61 vegan > omnivore 1.18193 0.02809

🧭 Explore Read Mapping of CGC

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